Hb_002232_470

Information

Type -
Description -
Location Contig2232: 362137-362400
Sequence    

Annotation

kegg
ID rcu:RCOM_0816820
description hypothetical protein
nr
ID XP_002518300.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RX31
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0816820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23143: 362001-362420
cDNA
(Sanger)
(ID:Location)		 028_P10.ab1: 362001-362420

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_470 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003226_220 0.11513561 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
3 Hb_001575_030 0.1283706751 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
4 Hb_000212_470 0.1344269989 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
5 Hb_001571_090 0.1455461606 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
6 Hb_001610_130 0.1592381825 - - 40S ribosomal protein S30 [Medicago truncatula]
7 Hb_005463_060 0.1684069399 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
8 Hb_003607_170 0.1700094472 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
9 Hb_000272_050 0.172194822 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
10 Hb_001488_400 0.1722344041 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
11 Hb_000661_240 0.1733397033 - - hypothetical protein POPTR_0009s05540g [Populus trichocarpa]
12 Hb_008847_020 0.1784815851 - - 40S ribosomal protein S17C [Hevea brasiliensis]
13 Hb_000656_340 0.1789663752 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
14 Hb_001019_080 0.1814972673 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
15 Hb_000236_460 0.181909913 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
16 Hb_023732_060 0.1833877217 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
17 Hb_002897_080 0.1834430917 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
18 Hb_009554_010 0.1845740347 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
19 Hb_004128_040 0.1860189858 - - -
20 Hb_014834_140 0.187262939 - - Uncharacterized protein TCM_015942 [Theobroma cacao]

Gene co-expression network

sample Hb_002232_470 Hb_002232_470 Hb_003226_220 Hb_003226_220 Hb_002232_470--Hb_003226_220 Hb_001575_030 Hb_001575_030 Hb_002232_470--Hb_001575_030 Hb_000212_470 Hb_000212_470 Hb_002232_470--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_002232_470--Hb_001571_090 Hb_001610_130 Hb_001610_130 Hb_002232_470--Hb_001610_130 Hb_005463_060 Hb_005463_060 Hb_002232_470--Hb_005463_060 Hb_003226_220--Hb_000212_470 Hb_003226_220--Hb_001571_090 Hb_000272_050 Hb_000272_050 Hb_003226_220--Hb_000272_050 Hb_003988_040 Hb_003988_040 Hb_003226_220--Hb_003988_040 Hb_003226_220--Hb_001575_030 Hb_003226_220--Hb_005463_060 Hb_001575_030--Hb_001610_130 Hb_015978_070 Hb_015978_070 Hb_001575_030--Hb_015978_070 Hb_001575_030--Hb_001571_090 Hb_000419_130 Hb_000419_130 Hb_001575_030--Hb_000419_130 Hb_008847_020 Hb_008847_020 Hb_000212_470--Hb_008847_020 Hb_000820_130 Hb_000820_130 Hb_000212_470--Hb_000820_130 Hb_010883_150 Hb_010883_150 Hb_000212_470--Hb_010883_150 Hb_002835_320 Hb_002835_320 Hb_000212_470--Hb_002835_320 Hb_000236_460 Hb_000236_460 Hb_000212_470--Hb_000236_460 Hb_000661_240 Hb_000661_240 Hb_001571_090--Hb_000661_240 Hb_007290_080 Hb_007290_080 Hb_001571_090--Hb_007290_080 Hb_009554_010 Hb_009554_010 Hb_001571_090--Hb_009554_010 Hb_026398_010 Hb_026398_010 Hb_001571_090--Hb_026398_010 Hb_001769_100 Hb_001769_100 Hb_001571_090--Hb_001769_100 Hb_001610_130--Hb_000419_130 Hb_003058_220 Hb_003058_220 Hb_001610_130--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_001610_130--Hb_005224_050 Hb_001610_130--Hb_003226_220 Hb_014834_140 Hb_014834_140 Hb_001610_130--Hb_014834_140 Hb_005463_060--Hb_003988_040 Hb_003607_170 Hb_003607_170 Hb_005463_060--Hb_003607_170 Hb_002897_080 Hb_002897_080 Hb_005463_060--Hb_002897_080 Hb_003638_080 Hb_003638_080 Hb_005463_060--Hb_003638_080 Hb_000046_260 Hb_000046_260 Hb_005463_060--Hb_000046_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.8807 7.03054 23.4511 108.845 62.2725 124.537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
217.352 381.249 29.3325 98.2974 0.595613

CAGE analysis