Hb_015978_070

Information

Type -
Description -
Location Contig15978: 36609-37461
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14215: 35644-35805 , PASA_asmbl_14218: 36691-37669 , PASA_asmbl_14219: 36848-37646 , PASA_asmbl_14220: 36637-41068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015978_070 0.0 - - -
2 Hb_000367_170 0.1152560483 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
3 Hb_001575_030 0.1180047113 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
4 Hb_000345_430 0.1226671884 - - 40S ribosomal protein S24A [Hevea brasiliensis]
5 Hb_001610_130 0.1285259314 - - 40S ribosomal protein S30 [Medicago truncatula]
6 Hb_012305_120 0.1334501629 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
7 Hb_000419_130 0.1343560394 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
8 Hb_007520_060 0.1429471884 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
9 Hb_000645_190 0.1475231369 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
10 Hb_009659_020 0.1502809089 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
11 Hb_001587_060 0.1537977127 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000009_040 0.1560539003 - - -
13 Hb_001769_100 0.1582059924 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
14 Hb_000134_020 0.1592397201 - - thioredoxin-like family protein [Hevea brasiliensis]
15 Hb_129204_010 0.1594899905 - - LOC100284182 [Zea mays]
16 Hb_003549_020 0.1615464718 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003058_220 0.1638292396 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
18 Hb_006541_020 0.1728716492 - - unknown [Lotus japonicus]
19 Hb_011310_060 0.1739573033 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
20 Hb_000236_460 0.1745462753 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_015978_070 Hb_015978_070 Hb_000367_170 Hb_000367_170 Hb_015978_070--Hb_000367_170 Hb_001575_030 Hb_001575_030 Hb_015978_070--Hb_001575_030 Hb_000345_430 Hb_000345_430 Hb_015978_070--Hb_000345_430 Hb_001610_130 Hb_001610_130 Hb_015978_070--Hb_001610_130 Hb_012305_120 Hb_012305_120 Hb_015978_070--Hb_012305_120 Hb_000419_130 Hb_000419_130 Hb_015978_070--Hb_000419_130 Hb_000367_170--Hb_001575_030 Hb_000367_170--Hb_001610_130 Hb_011310_060 Hb_011310_060 Hb_000367_170--Hb_011310_060 Hb_001053_160 Hb_001053_160 Hb_000367_170--Hb_001053_160 Hb_000009_040 Hb_000009_040 Hb_000367_170--Hb_000009_040 Hb_001575_030--Hb_001610_130 Hb_003226_220 Hb_003226_220 Hb_001575_030--Hb_003226_220 Hb_001571_090 Hb_001571_090 Hb_001575_030--Hb_001571_090 Hb_002232_470 Hb_002232_470 Hb_001575_030--Hb_002232_470 Hb_001575_030--Hb_000419_130 Hb_009659_020 Hb_009659_020 Hb_000345_430--Hb_009659_020 Hb_129204_010 Hb_129204_010 Hb_000345_430--Hb_129204_010 Hb_000345_430--Hb_012305_120 Hb_007520_060 Hb_007520_060 Hb_000345_430--Hb_007520_060 Hb_001587_060 Hb_001587_060 Hb_000345_430--Hb_001587_060 Hb_001610_130--Hb_000419_130 Hb_003058_220 Hb_003058_220 Hb_001610_130--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_001610_130--Hb_005224_050 Hb_001610_130--Hb_003226_220 Hb_014834_140 Hb_014834_140 Hb_001610_130--Hb_014834_140 Hb_000847_140 Hb_000847_140 Hb_012305_120--Hb_000847_140 Hb_001623_430 Hb_001623_430 Hb_012305_120--Hb_001623_430 Hb_012305_120--Hb_007520_060 Hb_012305_120--Hb_009659_020 Hb_001769_100 Hb_001769_100 Hb_000419_130--Hb_001769_100 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.00635 1.57756 2.47122 10.1788 9.41316 56.8044
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.3506 116.475 14.6151 9.46588 4.31221

CAGE analysis