Hb_009659_020

Information

Type -
Description -
Location Contig9659: 2790-6040
Sequence    

Annotation

kegg
ID brp:103870090
description uncharacterized LOC103870090
nr
ID XP_009146440.1
description PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
swissprot
ID -
description -
trembl
ID A0A0D3CKG4
description Uncharacterized protein (Fragment) OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63882: 2371-2559 , PASA_asmbl_63883: 2825-5982 , PASA_asmbl_63884: 2865-5954
cDNA
(Sanger)
(ID:Location)		 010_F22.ab1: 2825-5982

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009659_020 0.0 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
2 Hb_030954_020 0.0757082162 - - hypothetical protein RCOM_1330200 [Ricinus communis]
3 Hb_007520_060 0.0956660471 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
4 Hb_080477_060 0.1097976893 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000345_430 0.1146881148 - - 40S ribosomal protein S24A [Hevea brasiliensis]
6 Hb_001623_430 0.1219666635 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
7 Hb_000820_130 0.1233575639 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
8 Hb_003988_040 0.1245402628 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
9 Hb_008887_040 0.1261091102 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
10 Hb_000419_130 0.1274157281 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
11 Hb_003349_070 0.1316564758 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
12 Hb_000367_210 0.1318766056 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
13 Hb_001769_100 0.1359811489 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
14 Hb_006541_020 0.1373528544 - - unknown [Lotus japonicus]
15 Hb_001085_010 0.1392207905 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
16 Hb_000270_720 0.1393685381 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
17 Hb_002260_020 0.1401513301 - - -
18 Hb_000780_210 0.1402258087 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
19 Hb_183086_040 0.1406309317 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
20 Hb_001587_060 0.1409742735 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009659_020 Hb_009659_020 Hb_030954_020 Hb_030954_020 Hb_009659_020--Hb_030954_020 Hb_007520_060 Hb_007520_060 Hb_009659_020--Hb_007520_060 Hb_080477_060 Hb_080477_060 Hb_009659_020--Hb_080477_060 Hb_000345_430 Hb_000345_430 Hb_009659_020--Hb_000345_430 Hb_001623_430 Hb_001623_430 Hb_009659_020--Hb_001623_430 Hb_000820_130 Hb_000820_130 Hb_009659_020--Hb_000820_130 Hb_030954_020--Hb_080477_060 Hb_030954_020--Hb_001623_430 Hb_183086_040 Hb_183086_040 Hb_030954_020--Hb_183086_040 Hb_003349_070 Hb_003349_070 Hb_030954_020--Hb_003349_070 Hb_000106_100 Hb_000106_100 Hb_030954_020--Hb_000106_100 Hb_006541_020 Hb_006541_020 Hb_007520_060--Hb_006541_020 Hb_030565_040 Hb_030565_040 Hb_007520_060--Hb_030565_040 Hb_006718_010 Hb_006718_010 Hb_007520_060--Hb_006718_010 Hb_000367_210 Hb_000367_210 Hb_007520_060--Hb_000367_210 Hb_000419_130 Hb_000419_130 Hb_007520_060--Hb_000419_130 Hb_002260_020 Hb_002260_020 Hb_080477_060--Hb_002260_020 Hb_000091_100 Hb_000091_100 Hb_080477_060--Hb_000091_100 Hb_080477_060--Hb_001623_430 Hb_080477_060--Hb_007520_060 Hb_015978_070 Hb_015978_070 Hb_000345_430--Hb_015978_070 Hb_129204_010 Hb_129204_010 Hb_000345_430--Hb_129204_010 Hb_012305_120 Hb_012305_120 Hb_000345_430--Hb_012305_120 Hb_000345_430--Hb_007520_060 Hb_001587_060 Hb_001587_060 Hb_000345_430--Hb_001587_060 Hb_001623_430--Hb_003349_070 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100 Hb_002316_120 Hb_002316_120 Hb_000820_130--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000820_130--Hb_000367_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5295 6.8508 6.14951 35.311 10.2684 68.8768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
182.238 202.25 50.9376 20.8558 11.0951

CAGE analysis