Hb_080477_060

Information

Type -
Description -
Location Contig80477: 45537-46545
Sequence    

Annotation

kegg
ID rcu:RCOM_1676690
description hypothetical protein
nr
ID XP_002509501.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RBG7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1676690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58945: 46068-46806
cDNA
(Sanger)
(ID:Location)		 003_C22.ab1: 46077-46520 , 008_D04.ab1: 46088-46520 , 016_C23r.ab1: 45567-45957 , 021_H12.ab1: 46088-46520 , 023_D11.ab1: 46088-46520 , 051_G12.ab1: 46088-46520 , 052_M07.ab1: 46088-46520

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_080477_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_030954_020 0.0835193872 - - hypothetical protein RCOM_1330200 [Ricinus communis]
3 Hb_009659_020 0.1097976893 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
4 Hb_002260_020 0.1099725349 - - -
5 Hb_000091_100 0.1100322026 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001623_430 0.1220491253 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
7 Hb_007520_060 0.1308218676 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
8 Hb_003349_070 0.1334275948 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
9 Hb_000106_100 0.1385786578 - - -
10 Hb_004223_260 0.1412008009 - - hypothetical protein F383_09277 [Gossypium arboreum]
11 Hb_178968_170 0.1460608514 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
12 Hb_001723_080 0.1503037446 - - hypothetical protein L484_026139 [Morus notabilis]
13 Hb_103752_010 0.1509037581 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
14 Hb_001587_060 0.1574167111 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000922_100 0.1576075113 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
16 Hb_012305_120 0.1576566707 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
17 Hb_183086_040 0.1580218654 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
18 Hb_004474_010 0.1591816578 - - unnamed protein product [Coffea canephora]
19 Hb_021056_010 0.1600839645 - - unnamed protein product [Vitis vinifera]
20 Hb_004333_030 0.1639306882 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]

Gene co-expression network

sample Hb_080477_060 Hb_080477_060 Hb_030954_020 Hb_030954_020 Hb_080477_060--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_080477_060--Hb_009659_020 Hb_002260_020 Hb_002260_020 Hb_080477_060--Hb_002260_020 Hb_000091_100 Hb_000091_100 Hb_080477_060--Hb_000091_100 Hb_001623_430 Hb_001623_430 Hb_080477_060--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_080477_060--Hb_007520_060 Hb_030954_020--Hb_009659_020 Hb_030954_020--Hb_001623_430 Hb_183086_040 Hb_183086_040 Hb_030954_020--Hb_183086_040 Hb_003349_070 Hb_003349_070 Hb_030954_020--Hb_003349_070 Hb_000106_100 Hb_000106_100 Hb_030954_020--Hb_000106_100 Hb_009659_020--Hb_007520_060 Hb_000345_430 Hb_000345_430 Hb_009659_020--Hb_000345_430 Hb_009659_020--Hb_001623_430 Hb_000820_130 Hb_000820_130 Hb_009659_020--Hb_000820_130 Hb_008887_040 Hb_008887_040 Hb_002260_020--Hb_008887_040 Hb_168711_010 Hb_168711_010 Hb_002260_020--Hb_168711_010 Hb_008705_090 Hb_008705_090 Hb_002260_020--Hb_008705_090 Hb_002260_020--Hb_003349_070 Hb_002260_020--Hb_030954_020 Hb_000091_100--Hb_002260_020 Hb_000091_100--Hb_030954_020 Hb_000091_100--Hb_009659_020 Hb_021056_010 Hb_021056_010 Hb_000091_100--Hb_021056_010 Hb_000567_280 Hb_000567_280 Hb_000091_100--Hb_000567_280 Hb_001623_430--Hb_003349_070 Hb_001623_430--Hb_183086_040 Hb_000780_210 Hb_000780_210 Hb_001623_430--Hb_000780_210 Hb_004333_030 Hb_004333_030 Hb_001623_430--Hb_004333_030 Hb_000922_100 Hb_000922_100 Hb_001623_430--Hb_000922_100 Hb_006541_020 Hb_006541_020 Hb_007520_060--Hb_006541_020 Hb_030565_040 Hb_030565_040 Hb_007520_060--Hb_030565_040 Hb_006718_010 Hb_006718_010 Hb_007520_060--Hb_006718_010 Hb_000367_210 Hb_000367_210 Hb_007520_060--Hb_000367_210 Hb_000419_130 Hb_000419_130 Hb_007520_060--Hb_000419_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.6386 2.81643 2.0714 32.6047 17.0574 68.6147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
258.853 204.038 78.4678 21.3382 3.66793

CAGE analysis