Hb_183086_040

Information

Type -
Description -
Location Contig183086: 25700-27939
Sequence    

Annotation

kegg
ID pxb:103943376
description cytochrome b5 isoform A-like
nr
ID AAT84458.1
description cytochrome b5 isoform Cb5-A [Vernicia fordii]
swissprot
ID Q42342
description Cytochrome b5 isoform E OS=Arabidopsis thaliana GN=CYTB5-E PE=1 SV=2
trembl
ID Q5V9L4
description Cytochrome b5 isoform Cb5-A OS=Vernicia fordii PE=2 SV=1
Gene Ontology
ID GO:0005774
description cytochrome b5 isoform a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17867: 25721-27946 , PASA_asmbl_17868: 25855-27775 , PASA_asmbl_17869: 27781-27909
cDNA
(Sanger)
(ID:Location)		 022_E23.ab1: 25901-27946 , 031_O07.ab1: 25856-27946 , 051_P03.ab1: 25857-27930

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183086_040 0.0 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
2 Hb_000922_100 0.0539629083 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
3 Hb_000780_210 0.0783284915 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
4 Hb_000896_120 0.0840755709 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
5 Hb_000215_180 0.0845742231 - - hypothetical protein 17 [Hevea brasiliensis]
6 Hb_000085_330 0.0850780805 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
7 Hb_000224_090 0.093574165 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
8 Hb_001123_120 0.0973425676 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
9 Hb_000820_130 0.0984288314 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
10 Hb_000635_080 0.1001008121 - - 60S ribosomal protein L17A [Hevea brasiliensis]
11 Hb_000163_130 0.1011347972 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
12 Hb_001377_380 0.1025471016 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
13 Hb_001623_430 0.1043399634 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
14 Hb_017862_010 0.1053587651 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
15 Hb_000300_390 0.1067416701 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
16 Hb_001017_070 0.1070538751 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000722_040 0.1076093443 - - -
18 Hb_001545_060 0.1086086052 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
19 Hb_001785_040 0.1097006814 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
20 Hb_002107_120 0.1100258894 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_183086_040 Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_183086_040--Hb_000922_100 Hb_000780_210 Hb_000780_210 Hb_183086_040--Hb_000780_210 Hb_000896_120 Hb_000896_120 Hb_183086_040--Hb_000896_120 Hb_000215_180 Hb_000215_180 Hb_183086_040--Hb_000215_180 Hb_000085_330 Hb_000085_330 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_000922_100--Hb_000215_180 Hb_000922_100--Hb_000896_120 Hb_000329_330 Hb_000329_330 Hb_000922_100--Hb_000329_330 Hb_000722_040 Hb_000722_040 Hb_000922_100--Hb_000722_040 Hb_001545_060 Hb_001545_060 Hb_000922_100--Hb_001545_060 Hb_001377_380 Hb_001377_380 Hb_000780_210--Hb_001377_380 Hb_000635_080 Hb_000635_080 Hb_000780_210--Hb_000635_080 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_002316_120 Hb_002316_120 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_000300_390 Hb_000300_390 Hb_000896_120--Hb_000300_390 Hb_000896_120--Hb_000215_180 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120 Hb_000215_180--Hb_000780_210 Hb_000215_180--Hb_001377_380 Hb_000106_100 Hb_000106_100 Hb_000215_180--Hb_000106_100 Hb_000163_130 Hb_000163_130 Hb_000085_330--Hb_000163_130 Hb_002835_320 Hb_002835_320 Hb_000085_330--Hb_002835_320 Hb_148930_010 Hb_148930_010 Hb_000085_330--Hb_148930_010 Hb_001123_120 Hb_001123_120 Hb_000085_330--Hb_001123_120 Hb_000645_190 Hb_000645_190 Hb_000085_330--Hb_000645_190 Hb_000236_150 Hb_000236_150 Hb_000224_090--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000224_090--Hb_003053_030 Hb_000069_100 Hb_000069_100 Hb_000224_090--Hb_000069_100 Hb_000224_090--Hb_000163_130 Hb_000224_090--Hb_000722_040 Hb_000224_090--Hb_012539_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.839 46.6218 31.8984 94.6017 74.375 144.538
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
592.238 659.59 311.825 142.393 29.4237

CAGE analysis