Hb_001545_060

Information

Type -
Description -
Location Contig1545: 93700-96687
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06300g
description POPTRDRAFT_816194; hypothetical protein
nr
ID XP_012084508.1
description PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JXG4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20148 PE=4 SV=1
Gene Ontology
ID GO:0005783
description wd repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13354: 96386-96779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_060 0.0 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
2 Hb_003376_130 0.0858967822 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
3 Hb_000224_090 0.0876574475 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
4 Hb_000069_100 0.0898277336 - - conserved hypothetical protein [Ricinus communis]
5 Hb_017862_010 0.0912826978 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
6 Hb_000363_200 0.0947531278 - - 40S ribosomal protein S8, putative [Ricinus communis]
7 Hb_000193_200 0.0948310079 - - rotamase, putative [Ricinus communis]
8 Hb_000398_160 0.0964499796 - - GDP-mannose transporter, putative [Ricinus communis]
9 Hb_148930_010 0.0971758024 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
10 Hb_000922_100 0.0983205035 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
11 Hb_000329_330 0.1003248688 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
12 Hb_003938_180 0.1005076371 - - lesion inducing family protein [Populus trichocarpa]
13 Hb_000722_040 0.1007038117 - - -
14 Hb_002078_460 0.1032327963 - - -
15 Hb_001935_030 0.1041556462 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004041_040 0.1058114113 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
17 Hb_000865_070 0.1067233359 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
18 Hb_001123_120 0.1069026281 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
19 Hb_183086_040 0.1086086052 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
20 Hb_003929_120 0.1088152996 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001545_060 Hb_001545_060 Hb_003376_130 Hb_003376_130 Hb_001545_060--Hb_003376_130 Hb_000224_090 Hb_000224_090 Hb_001545_060--Hb_000224_090 Hb_000069_100 Hb_000069_100 Hb_001545_060--Hb_000069_100 Hb_017862_010 Hb_017862_010 Hb_001545_060--Hb_017862_010 Hb_000363_200 Hb_000363_200 Hb_001545_060--Hb_000363_200 Hb_000193_200 Hb_000193_200 Hb_001545_060--Hb_000193_200 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_148930_010 Hb_148930_010 Hb_003376_130--Hb_148930_010 Hb_003086_100 Hb_003086_100 Hb_003376_130--Hb_003086_100 Hb_148200_010 Hb_148200_010 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_000236_150 Hb_000236_150 Hb_000224_090--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000224_090--Hb_003053_030 Hb_000224_090--Hb_000069_100 Hb_000163_130 Hb_000163_130 Hb_000224_090--Hb_000163_130 Hb_000722_040 Hb_000722_040 Hb_000224_090--Hb_000722_040 Hb_012539_020 Hb_012539_020 Hb_000224_090--Hb_012539_020 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_006831_030 Hb_006831_030 Hb_000069_100--Hb_006831_030 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_017862_010--Hb_000212_260 Hb_017862_010--Hb_006831_030 Hb_017862_010--Hb_000224_090 Hb_003226_280 Hb_003226_280 Hb_000363_200--Hb_003226_280 Hb_000865_070 Hb_000865_070 Hb_000363_200--Hb_000865_070 Hb_003097_210 Hb_003097_210 Hb_000363_200--Hb_003097_210 Hb_002078_460 Hb_002078_460 Hb_000363_200--Hb_002078_460 Hb_116898_010 Hb_116898_010 Hb_000363_200--Hb_116898_010 Hb_002107_120 Hb_002107_120 Hb_000193_200--Hb_002107_120 Hb_000193_200--Hb_003376_130 Hb_000193_200--Hb_000069_100 Hb_000193_200--Hb_000224_090 Hb_000193_200--Hb_003053_030 Hb_012265_010 Hb_012265_010 Hb_000193_200--Hb_012265_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.37431 1.1191 0.913292 3.83078 6.48783 6.05761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8669 25.4991 18.0782 7.87639 1.84187

CAGE analysis