Hb_002107_120

Information

Type -
Description -
Location Contig2107: 81180-84854
Sequence    

Annotation

kegg
ID cit:102628584
description transcription elongation factor 1 homolog
nr
ID XP_012074202.1
description PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
swissprot
ID Q8LHP0
description Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1
trembl
ID A0A067GDH8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034538mg PE=4 SV=1
Gene Ontology
ID GO:0003746
description transcription elongation factor 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21815: 81174-84729 , PASA_asmbl_21817: 82185-83215 , PASA_asmbl_21818: 82732-82882 , PASA_asmbl_21819: 84312-84704
cDNA
(Sanger)
(ID:Location)		 017_F03.ab1: 81174-84729

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002107_120 0.0 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
2 Hb_003053_030 0.0734880344 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
3 Hb_148200_010 0.0757933735 - - hypothetical protein 33 [Hevea brasiliensis]
4 Hb_000193_200 0.0764300976 - - rotamase, putative [Ricinus communis]
5 Hb_003376_130 0.0787279505 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
6 Hb_001268_140 0.082024902 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005211_190 0.0828118044 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
8 Hb_000364_030 0.0853597853 - - RNA binding protein, putative [Ricinus communis]
9 Hb_002835_320 0.0855754984 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_004156_040 0.0860129452 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
11 Hb_001045_080 0.0873775923 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
12 Hb_001300_270 0.088940959 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
13 Hb_009421_040 0.0891609069 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
14 Hb_026048_070 0.0896129753 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
15 Hb_000329_330 0.0915752167 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
16 Hb_001433_050 0.093656198 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_000365_080 0.0937919921 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
18 Hb_012265_010 0.0941691527 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
19 Hb_001016_090 0.0942629924 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
20 Hb_007304_070 0.0943969369 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002107_120 Hb_002107_120 Hb_003053_030 Hb_003053_030 Hb_002107_120--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_002107_120--Hb_148200_010 Hb_000193_200 Hb_000193_200 Hb_002107_120--Hb_000193_200 Hb_003376_130 Hb_003376_130 Hb_002107_120--Hb_003376_130 Hb_001268_140 Hb_001268_140 Hb_002107_120--Hb_001268_140 Hb_005211_190 Hb_005211_190 Hb_002107_120--Hb_005211_190 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_148200_010--Hb_001191_090 Hb_003376_030 Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_000193_200--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000193_200--Hb_000069_100 Hb_000224_090 Hb_000224_090 Hb_000193_200--Hb_000224_090 Hb_000193_200--Hb_003053_030 Hb_012265_010 Hb_012265_010 Hb_000193_200--Hb_012265_010 Hb_000329_330 Hb_000329_330 Hb_003376_130--Hb_000329_330 Hb_000212_260 Hb_000212_260 Hb_003376_130--Hb_000212_260 Hb_148930_010 Hb_148930_010 Hb_003376_130--Hb_148930_010 Hb_003086_100 Hb_003086_100 Hb_003376_130--Hb_003086_100 Hb_003376_130--Hb_148200_010 Hb_002571_020 Hb_002571_020 Hb_003376_130--Hb_002571_020 Hb_001300_270 Hb_001300_270 Hb_001268_140--Hb_001300_270 Hb_000134_330 Hb_000134_330 Hb_001268_140--Hb_000134_330 Hb_007944_040 Hb_007944_040 Hb_001268_140--Hb_007944_040 Hb_001045_080 Hb_001045_080 Hb_001268_140--Hb_001045_080 Hb_155764_020 Hb_155764_020 Hb_001268_140--Hb_155764_020 Hb_001269_270 Hb_001269_270 Hb_001268_140--Hb_001269_270 Hb_000365_080 Hb_000365_080 Hb_005211_190--Hb_000365_080 Hb_002609_210 Hb_002609_210 Hb_005211_190--Hb_002609_210 Hb_001424_020 Hb_001424_020 Hb_005211_190--Hb_001424_020 Hb_009421_040 Hb_009421_040 Hb_005211_190--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_005211_190--Hb_000680_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.99 39.6363 51.2621 64.0906 90.4904 127.311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
421.535 433.912 201.577 125.586 67.6058

CAGE analysis