Hb_007944_040

Information

Type -
Description -
Location Contig7944: 47854-51370
Sequence    

Annotation

kegg
ID cit:102608044
description 60S ribosomal protein L18a-like protein-like
nr
ID ADR71270.1
description 60S ribosomal protein L18aB [Hevea brasiliensis]
swissprot
ID Q8L9S1
description 60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2
trembl
ID I3NMN3
description 60S ribosomal protein L18aB OS=Hevea brasiliensis GN=RPL18aB PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58489: 47854-51403 , PASA_asmbl_58490: 47926-51282 , PASA_asmbl_58491: 49163-49374
cDNA
(Sanger)
(ID:Location)		 007_I06.ab1: 47908-51299 , 013_O19.ab1: 47964-51304 , 014_N13.ab1: 47969-51299 , 024_O14.ab1: 48015-51358 , 033_E21.ab1: 47975-51304 , 048_A19.ab1: 47984-51361 , 052_H21.ab1: 47959-51299

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007944_040 0.0 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
2 Hb_000111_340 0.0551645476 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
3 Hb_001268_140 0.0600361969 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007575_070 0.0669175802 - - Histone H3.2 [Glycine soja]
5 Hb_002588_010 0.0670501393 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
6 Hb_001300_270 0.0674916328 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
7 Hb_011311_010 0.0696417031 - - 60S ribosomal protein L27C [Hevea brasiliensis]
8 Hb_001158_230 0.0760505336 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
9 Hb_001634_040 0.076321899 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
10 Hb_005590_020 0.0783082437 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
11 Hb_010672_060 0.0799770491 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
12 Hb_026398_010 0.0820339325 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
13 Hb_012753_230 0.0842170518 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
14 Hb_005511_160 0.0844699886 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
15 Hb_009384_020 0.0854021974 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
16 Hb_019516_100 0.0859331138 - - 40S ribosomal protein S14, putative [Ricinus communis]
17 Hb_002713_070 0.0863474862 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
18 Hb_002259_070 0.0867937206 - - taz protein, putative [Ricinus communis]
19 Hb_001045_080 0.0873568017 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
20 Hb_000025_600 0.0880854152 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_007944_040 Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_007944_040--Hb_000111_340 Hb_001268_140 Hb_001268_140 Hb_007944_040--Hb_001268_140 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_002588_010 Hb_002588_010 Hb_007944_040--Hb_002588_010 Hb_001300_270 Hb_001300_270 Hb_007944_040--Hb_001300_270 Hb_011311_010 Hb_011311_010 Hb_007944_040--Hb_011311_010 Hb_000334_210 Hb_000334_210 Hb_000111_340--Hb_000334_210 Hb_010672_060 Hb_010672_060 Hb_000111_340--Hb_010672_060 Hb_000111_340--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_000111_340--Hb_007304_070 Hb_003656_070 Hb_003656_070 Hb_000111_340--Hb_003656_070 Hb_001268_140--Hb_001300_270 Hb_000134_330 Hb_000134_330 Hb_001268_140--Hb_000134_330 Hb_001045_080 Hb_001045_080 Hb_001268_140--Hb_001045_080 Hb_155764_020 Hb_155764_020 Hb_001268_140--Hb_155764_020 Hb_001269_270 Hb_001269_270 Hb_001268_140--Hb_001269_270 Hb_001634_040 Hb_001634_040 Hb_007575_070--Hb_001634_040 Hb_000805_130 Hb_000805_130 Hb_007575_070--Hb_000805_130 Hb_007575_070--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_007575_070--Hb_000062_390 Hb_007575_070--Hb_001045_080 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_002588_010--Hb_011311_010 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_001300_270--Hb_000134_330 Hb_001300_270--Hb_155764_020 Hb_002296_060 Hb_002296_060 Hb_001300_270--Hb_002296_060 Hb_001300_270--Hb_000111_340 Hb_002660_030 Hb_002660_030 Hb_011311_010--Hb_002660_030 Hb_026398_010 Hb_026398_010 Hb_011311_010--Hb_026398_010 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.9913 22.5342 29.8566 22.0547 41.5869 49.7748
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
118.84 211.137 66.8189 35.9306 25.9401

CAGE analysis