Hb_026398_010

Information

Type -
Description -
Location Contig26398: 29382-34172
Sequence    

Annotation

kegg
ID rcu:RCOM_0961900
description 40S ribosomal protein S18, putative
nr
ID KJB65871.1
description hypothetical protein B456_010G132100 [Gossypium raimondii]
swissprot
ID P34788
description 40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1
trembl
ID A0A0D2UCR6
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G132100 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27579: 33759-34130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026398_010 0.0 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
2 Hb_172221_010 0.0593067733 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
3 Hb_011311_010 0.0685589374 - - 60S ribosomal protein L27C [Hevea brasiliensis]
4 Hb_002660_030 0.0711821086 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000329_020 0.0721332333 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
6 Hb_000042_260 0.0731432713 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
7 Hb_002588_010 0.0736964314 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
8 Hb_002835_320 0.0743755793 - - 60S ribosomal protein L27B [Hevea brasiliensis]
9 Hb_000617_090 0.0747011614 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
10 Hb_003226_210 0.0781493125 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
11 Hb_001269_270 0.0790743512 - - 60S ribosomal protein L27B [Hevea brasiliensis]
12 Hb_019516_100 0.0813940925 - - 40S ribosomal protein S14, putative [Ricinus communis]
13 Hb_007944_040 0.0820339325 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
14 Hb_000163_130 0.0858948199 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
15 Hb_000312_090 0.0888566792 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
16 Hb_007304_070 0.0889814494 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
17 Hb_000062_390 0.0896790128 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
18 Hb_000915_120 0.0920931246 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
19 Hb_012395_130 0.0921948504 - - Os02g0814700 [Oryza sativa Japonica Group]
20 Hb_000111_340 0.0929374701 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]

Gene co-expression network

sample Hb_026398_010 Hb_026398_010 Hb_172221_010 Hb_172221_010 Hb_026398_010--Hb_172221_010 Hb_011311_010 Hb_011311_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_000329_020 Hb_000329_020 Hb_026398_010--Hb_000329_020 Hb_000042_260 Hb_000042_260 Hb_026398_010--Hb_000042_260 Hb_002588_010 Hb_002588_010 Hb_026398_010--Hb_002588_010 Hb_172221_010--Hb_000329_020 Hb_172221_010--Hb_000042_260 Hb_002909_130 Hb_002909_130 Hb_172221_010--Hb_002909_130 Hb_012395_130 Hb_012395_130 Hb_172221_010--Hb_012395_130 Hb_172221_010--Hb_002588_010 Hb_011311_010--Hb_002660_030 Hb_011311_010--Hb_002588_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030 Hb_002713_070 Hb_002713_070 Hb_002660_030--Hb_002713_070 Hb_003226_210 Hb_003226_210 Hb_002660_030--Hb_003226_210 Hb_000134_070 Hb_000134_070 Hb_002660_030--Hb_000134_070 Hb_002660_030--Hb_002925_030 Hb_000329_020--Hb_000042_260 Hb_000329_020--Hb_002909_130 Hb_000331_640 Hb_000331_640 Hb_000329_020--Hb_000331_640 Hb_019516_100 Hb_019516_100 Hb_000329_020--Hb_019516_100 Hb_000042_260--Hb_019516_100 Hb_000042_260--Hb_002588_010 Hb_000042_260--Hb_002909_130 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_002588_010--Hb_019516_100 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.0262 31.1562 36.156 60.5983 46.2716 86.3448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
187.264 366.144 88.2485 70.0258 26.8243

CAGE analysis