Hb_000331_640

Information

Type transcription factor
Description TF Family: TAZ
Location Contig331: 497747-500818
Sequence    

Annotation

kegg
ID rcu:RCOM_1507810
description protein binding protein, putative
nr
ID XP_002511276.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q9FMK7
description BTB/POZ and TAZ domain-containing protein 1 OS=Arabidopsis thaliana GN=BT1 PE=1 SV=1
trembl
ID B9RAQ1
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1507810 PE=4 SV=1
Gene Ontology
ID GO:0003712
description btb poz and taz domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34823: 500356-500599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_640 0.0 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
2 Hb_000329_020 0.0861213289 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
3 Hb_002909_130 0.09415638 - - Uncharacterized protein isoform 1 [Theobroma cacao]
4 Hb_000042_260 0.0981077921 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
5 Hb_009880_010 0.0988609367 - - PREDICTED: cytochrome c [Jatropha curcas]
6 Hb_000062_650 0.1039662381 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
7 Hb_002811_080 0.1062906892 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
8 Hb_002588_010 0.1069939847 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
9 Hb_002259_070 0.1084229365 - - taz protein, putative [Ricinus communis]
10 Hb_172221_010 0.10878345 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
11 Hb_000093_110 0.1091935537 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
12 Hb_000735_040 0.1102137338 - - 60S ribosomal protein L32A [Hevea brasiliensis]
13 Hb_011311_010 0.111025383 - - 60S ribosomal protein L27C [Hevea brasiliensis]
14 Hb_001979_040 0.1127448964 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
15 Hb_002301_130 0.1147099298 - - PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
16 Hb_001780_040 0.1149751946 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
17 Hb_007944_040 0.1161218592 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
18 Hb_000676_160 0.1161225116 - - folate carrier protein, putative [Ricinus communis]
19 Hb_019516_100 0.1171078656 - - 40S ribosomal protein S14, putative [Ricinus communis]
20 Hb_000906_040 0.1178639584 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000331_640 Hb_000331_640 Hb_000329_020 Hb_000329_020 Hb_000331_640--Hb_000329_020 Hb_002909_130 Hb_002909_130 Hb_000331_640--Hb_002909_130 Hb_000042_260 Hb_000042_260 Hb_000331_640--Hb_000042_260 Hb_009880_010 Hb_009880_010 Hb_000331_640--Hb_009880_010 Hb_000062_650 Hb_000062_650 Hb_000331_640--Hb_000062_650 Hb_002811_080 Hb_002811_080 Hb_000331_640--Hb_002811_080 Hb_172221_010 Hb_172221_010 Hb_000329_020--Hb_172221_010 Hb_000329_020--Hb_000042_260 Hb_026398_010 Hb_026398_010 Hb_000329_020--Hb_026398_010 Hb_000329_020--Hb_002909_130 Hb_019516_100 Hb_019516_100 Hb_000329_020--Hb_019516_100 Hb_002909_130--Hb_172221_010 Hb_002909_130--Hb_000042_260 Hb_001085_270 Hb_001085_270 Hb_002909_130--Hb_001085_270 Hb_001158_230 Hb_001158_230 Hb_002909_130--Hb_001158_230 Hb_008948_050 Hb_008948_050 Hb_002909_130--Hb_008948_050 Hb_000042_260--Hb_019516_100 Hb_000042_260--Hb_172221_010 Hb_002588_010 Hb_002588_010 Hb_000042_260--Hb_002588_010 Hb_000042_260--Hb_026398_010 Hb_009880_010--Hb_000042_260 Hb_009880_010--Hb_008948_050 Hb_000645_140 Hb_000645_140 Hb_009880_010--Hb_000645_140 Hb_009880_010--Hb_002909_130 Hb_001512_050 Hb_001512_050 Hb_009880_010--Hb_001512_050 Hb_000506_070 Hb_000506_070 Hb_000062_650--Hb_000506_070 Hb_008921_020 Hb_008921_020 Hb_000062_650--Hb_008921_020 Hb_003641_020 Hb_003641_020 Hb_000062_650--Hb_003641_020 Hb_007044_130 Hb_007044_130 Hb_000062_650--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_000062_650--Hb_000735_040 Hb_000062_650--Hb_002588_010 Hb_000567_410 Hb_000567_410 Hb_002811_080--Hb_000567_410 Hb_000331_700 Hb_000331_700 Hb_002811_080--Hb_000331_700 Hb_000975_320 Hb_000975_320 Hb_002811_080--Hb_000975_320 Hb_002811_080--Hb_002588_010 Hb_000330_070 Hb_000330_070 Hb_002811_080--Hb_000330_070 Hb_011311_010 Hb_011311_010 Hb_002811_080--Hb_011311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2612 10.6317 18.279 7.24299 12.9267 18.593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.0491 90.6875 17.4501 19.4687 10.0224

CAGE analysis