Hb_001512_050

Information

Type -
Description -
Location Contig1512: 49557-54068
Sequence    

Annotation

kegg
ID rcu:RCOM_0532660
description copine, putative
nr
ID XP_002526974.1
description copine, putative [Ricinus communis]
swissprot
ID Q9LY87
description E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1
trembl
ID B9SLV5
description Copine, putative OS=Ricinus communis GN=RCOM_0532660 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rglg2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12802: 50316-53939
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001512_050 0.0 - - copine, putative [Ricinus communis]
2 Hb_007245_080 0.0976701996 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
3 Hb_116349_110 0.1005753485 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
4 Hb_000062_650 0.1015077075 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
5 Hb_000576_060 0.103994564 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
6 Hb_002588_010 0.1053563751 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
7 Hb_004223_040 0.1057945535 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
8 Hb_000975_320 0.1097699749 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
9 Hb_007044_130 0.1120639768 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
10 Hb_003058_080 0.1128472527 - - Chaperonin 10 isoform 1 [Theobroma cacao]
11 Hb_002811_080 0.1129797819 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
12 Hb_009880_010 0.1134727332 - - PREDICTED: cytochrome c [Jatropha curcas]
13 Hb_000735_040 0.113632022 - - 60S ribosomal protein L32A [Hevea brasiliensis]
14 Hb_008921_020 0.1155226769 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
15 Hb_012368_020 0.1163814556 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
16 Hb_000042_260 0.1168942975 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
17 Hb_000093_110 0.1174018285 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
18 Hb_009476_020 0.1192848988 - - tryptophan biosynthesis protein, putative [Ricinus communis]
19 Hb_027472_160 0.1198816151 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
20 Hb_007885_010 0.1237651305 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001512_050 Hb_001512_050 Hb_007245_080 Hb_007245_080 Hb_001512_050--Hb_007245_080 Hb_116349_110 Hb_116349_110 Hb_001512_050--Hb_116349_110 Hb_000062_650 Hb_000062_650 Hb_001512_050--Hb_000062_650 Hb_000576_060 Hb_000576_060 Hb_001512_050--Hb_000576_060 Hb_002588_010 Hb_002588_010 Hb_001512_050--Hb_002588_010 Hb_004223_040 Hb_004223_040 Hb_001512_050--Hb_004223_040 Hb_009476_020 Hb_009476_020 Hb_007245_080--Hb_009476_020 Hb_002235_080 Hb_002235_080 Hb_007245_080--Hb_002235_080 Hb_001789_050 Hb_001789_050 Hb_007245_080--Hb_001789_050 Hb_007245_080--Hb_000576_060 Hb_000735_040 Hb_000735_040 Hb_007245_080--Hb_000735_040 Hb_007120_090 Hb_007120_090 Hb_007245_080--Hb_007120_090 Hb_000645_140 Hb_000645_140 Hb_116349_110--Hb_000645_140 Hb_116349_110--Hb_002588_010 Hb_000975_320 Hb_000975_320 Hb_116349_110--Hb_000975_320 Hb_002811_080 Hb_002811_080 Hb_116349_110--Hb_002811_080 Hb_000906_040 Hb_000906_040 Hb_116349_110--Hb_000906_040 Hb_000506_070 Hb_000506_070 Hb_000062_650--Hb_000506_070 Hb_008921_020 Hb_008921_020 Hb_000062_650--Hb_008921_020 Hb_003641_020 Hb_003641_020 Hb_000062_650--Hb_003641_020 Hb_007044_130 Hb_007044_130 Hb_000062_650--Hb_007044_130 Hb_000062_650--Hb_000735_040 Hb_000062_650--Hb_002588_010 Hb_000576_060--Hb_008921_020 Hb_000576_060--Hb_000735_040 Hb_000576_060--Hb_001789_050 Hb_000576_060--Hb_000062_650 Hb_000788_010 Hb_000788_010 Hb_000576_060--Hb_000788_010 Hb_001141_140 Hb_001141_140 Hb_000576_060--Hb_001141_140 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_011236_010 Hb_011236_010 Hb_004223_040--Hb_011236_010 Hb_004223_040--Hb_008921_020 Hb_012368_020 Hb_012368_020 Hb_004223_040--Hb_012368_020 Hb_004223_040--Hb_007044_130 Hb_004223_040--Hb_000735_040 Hb_004223_040--Hb_000062_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.07185 6.33905 9.8354 7.51469 7.46714 5.15391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2797 45.6435 9.26962 5.07306 2.02295

CAGE analysis