Hb_009476_020

Information

Type -
Description -
Location Contig9476: 16365-22126
Sequence    

Annotation

kegg
ID rcu:RCOM_0838150
description tryptophan biosynthesis protein, putative (EC:5.3.1.24)
nr
ID XP_002528298.1
description tryptophan biosynthesis protein, putative [Ricinus communis]
swissprot
ID Q42440
description N-(5'-phosphoribosyl)anthranilate isomerase 1, chloroplastic OS=Arabidopsis thaliana GN=PAI1 PE=2 SV=1
trembl
ID B9SQM9
description Tryptophan biosynthesis protein, putative OS=Ricinus communis GN=RCOM_0838150 PE=3 SV=1
Gene Ontology
ID GO:0009507
description phosphoribosylanthranilate isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_020 0.0 - - tryptophan biosynthesis protein, putative [Ricinus communis]
2 Hb_007245_080 0.0668710296 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
3 Hb_000506_070 0.0677147624 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
4 Hb_000735_040 0.0728916241 - - 60S ribosomal protein L32A [Hevea brasiliensis]
5 Hb_174865_010 0.0841939158 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
6 Hb_000676_160 0.0847940252 - - folate carrier protein, putative [Ricinus communis]
7 Hb_003018_020 0.0886996027 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
8 Hb_008921_020 0.0901649783 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
9 Hb_007120_090 0.090948987 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
10 Hb_000062_650 0.0915675734 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
11 Hb_001016_150 0.0964194002 - - Rop1 [Hevea brasiliensis]
12 Hb_001789_050 0.0973197672 - - 60S ribosomal protein L36-2 [Morus notabilis]
13 Hb_000576_060 0.0976338834 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
14 Hb_004223_040 0.1001466467 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
15 Hb_002006_130 0.100156627 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
16 Hb_001863_430 0.1003818955 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
17 Hb_003494_050 0.1012764305 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
18 Hb_000997_120 0.1012769613 - - 40S ribosomal protein S15E [Hevea brasiliensis]
19 Hb_000948_220 0.1016445159 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
20 Hb_014720_040 0.1033590823 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_009476_020 Hb_009476_020 Hb_007245_080 Hb_007245_080 Hb_009476_020--Hb_007245_080 Hb_000506_070 Hb_000506_070 Hb_009476_020--Hb_000506_070 Hb_000735_040 Hb_000735_040 Hb_009476_020--Hb_000735_040 Hb_174865_010 Hb_174865_010 Hb_009476_020--Hb_174865_010 Hb_000676_160 Hb_000676_160 Hb_009476_020--Hb_000676_160 Hb_003018_020 Hb_003018_020 Hb_009476_020--Hb_003018_020 Hb_002235_080 Hb_002235_080 Hb_007245_080--Hb_002235_080 Hb_001789_050 Hb_001789_050 Hb_007245_080--Hb_001789_050 Hb_000576_060 Hb_000576_060 Hb_007245_080--Hb_000576_060 Hb_007245_080--Hb_000735_040 Hb_007120_090 Hb_007120_090 Hb_007245_080--Hb_007120_090 Hb_000506_070--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_000506_070--Hb_000062_650 Hb_000506_070--Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_000506_070--Hb_003226_100 Hb_001141_140 Hb_001141_140 Hb_000506_070--Hb_001141_140 Hb_001863_430 Hb_001863_430 Hb_000506_070--Hb_001863_430 Hb_000735_040--Hb_174865_010 Hb_000735_040--Hb_001141_140 Hb_000093_110 Hb_000093_110 Hb_000735_040--Hb_000093_110 Hb_008921_020 Hb_008921_020 Hb_000735_040--Hb_008921_020 Hb_000735_040--Hb_003018_020 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_174865_010--Hb_003018_020 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300 Hb_000676_160--Hb_000735_040 Hb_002798_020 Hb_002798_020 Hb_000676_160--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_000676_160--Hb_007065_010 Hb_086639_090 Hb_086639_090 Hb_000676_160--Hb_086639_090 Hb_000676_160--Hb_007120_090 Hb_003018_020--Hb_003226_100 Hb_004157_030 Hb_004157_030 Hb_003018_020--Hb_004157_030 Hb_003018_020--Hb_001141_140 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.674793 0.669529 1.18966 1.3859 0.681155 1.07727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.04406 4.64521 0.888841 0.857946 0.556366

CAGE analysis