Hb_002235_080

Information

Type -
Description -
Location Contig2235: 45337-48182
Sequence    

Annotation

kegg
ID vvi:100261745
description U3 small nucleolar ribonucleoprotein protein IMP3
nr
ID XP_002281732.1
description PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
swissprot
ID Q3T0M3
description U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1
trembl
ID D7SMM8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0083g00950 PE=4 SV=1
Gene Ontology
ID GO:0030529
description u3 small nucleolar ribonucleoprotein protein imp3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23198: 45467-48227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002235_080 0.0 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
2 Hb_003929_150 0.0752229213 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
3 Hb_007245_080 0.0826433064 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
4 Hb_006478_160 0.0921461189 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
5 Hb_000093_110 0.0938007535 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
6 Hb_000788_010 0.0994067638 - - 40S ribosomal protein S16A [Hevea brasiliensis]
7 Hb_008921_020 0.1037380255 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
8 Hb_011236_010 0.1046085444 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
9 Hb_000735_040 0.1050547563 - - 60S ribosomal protein L32A [Hevea brasiliensis]
10 Hb_000506_070 0.1078695594 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
11 Hb_000576_060 0.1078881036 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
12 Hb_001369_170 0.1079540681 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
13 Hb_009476_020 0.1088508034 - - tryptophan biosynthesis protein, putative [Ricinus communis]
14 Hb_001789_050 0.1088952012 - - 60S ribosomal protein L36-2 [Morus notabilis]
15 Hb_004543_040 0.1094108073 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_003038_190 0.1121141508 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
17 Hb_000441_110 0.1129822111 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
18 Hb_000699_090 0.1134629851 - - cyclophilin, putative [Ricinus communis]
19 Hb_001863_430 0.1141348355 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
20 Hb_002006_130 0.1166609042 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]

Gene co-expression network

sample Hb_002235_080 Hb_002235_080 Hb_003929_150 Hb_003929_150 Hb_002235_080--Hb_003929_150 Hb_007245_080 Hb_007245_080 Hb_002235_080--Hb_007245_080 Hb_006478_160 Hb_006478_160 Hb_002235_080--Hb_006478_160 Hb_000093_110 Hb_000093_110 Hb_002235_080--Hb_000093_110 Hb_000788_010 Hb_000788_010 Hb_002235_080--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_002235_080--Hb_008921_020 Hb_011236_010 Hb_011236_010 Hb_003929_150--Hb_011236_010 Hb_003929_150--Hb_006478_160 Hb_000155_160 Hb_000155_160 Hb_003929_150--Hb_000155_160 Hb_003929_150--Hb_007245_080 Hb_001718_030 Hb_001718_030 Hb_003929_150--Hb_001718_030 Hb_009476_020 Hb_009476_020 Hb_007245_080--Hb_009476_020 Hb_001789_050 Hb_001789_050 Hb_007245_080--Hb_001789_050 Hb_000576_060 Hb_000576_060 Hb_007245_080--Hb_000576_060 Hb_000735_040 Hb_000735_040 Hb_007245_080--Hb_000735_040 Hb_007120_090 Hb_007120_090 Hb_007245_080--Hb_007120_090 Hb_000567_410 Hb_000567_410 Hb_006478_160--Hb_000567_410 Hb_000731_190 Hb_000731_190 Hb_006478_160--Hb_000731_190 Hb_006478_160--Hb_000093_110 Hb_006478_160--Hb_000735_040 Hb_006478_160--Hb_000788_010 Hb_006478_160--Hb_008921_020 Hb_000093_110--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000093_110--Hb_002588_010 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_000093_110--Hb_000567_410 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010 Hb_001369_170 Hb_001369_170 Hb_000788_010--Hb_001369_170 Hb_000788_010--Hb_000576_060 Hb_000788_010--Hb_000567_410 Hb_001085_270 Hb_001085_270 Hb_000788_010--Hb_001085_270 Hb_002811_080 Hb_002811_080 Hb_000788_010--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_008921_020--Hb_005063_050 Hb_008921_020--Hb_000576_060 Hb_008921_020--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_008921_020--Hb_000062_650 Hb_000506_070 Hb_000506_070 Hb_008921_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_008921_020--Hb_001141_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.6319 4.98978 4.10821 6.62922 2.57867 3.3086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.4551 25.6565 5.55296 6.39012 3.9398

CAGE analysis