Hb_002588_010

Information

Type -
Description -
Location Contig2588: 10161-16501
Sequence    

Annotation

kegg
ID mdm:103424624
description transcription factor BTF3 homolog 4-like
nr
ID XP_008360943.1
description PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
swissprot
ID P20290
description Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1
trembl
ID D6PAP3
description Nascent polypeptide-associated complex subunit beta OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0006351
description transcription factor btf3 homolog 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26883: 10068-16498
cDNA
(Sanger)
(ID:Location)		 010_N05.ab1: 10076-16486 , 013_P08.ab1: 10068-16409 , 016_M22.ab1: 10076-16444 , 018_L05.ab1: 10082-16480 , 049_J07.ab1: 10082-16477

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002588_010 0.0 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
2 Hb_000042_260 0.061968232 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
3 Hb_011311_010 0.0644223644 - - 60S ribosomal protein L27C [Hevea brasiliensis]
4 Hb_000093_110 0.0648975066 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
5 Hb_019516_100 0.065831915 - - 40S ribosomal protein S14, putative [Ricinus communis]
6 Hb_007944_040 0.0670501393 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
7 Hb_000111_340 0.0674601911 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
8 Hb_000062_390 0.0705217337 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
9 Hb_026398_010 0.0736964314 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
10 Hb_010672_060 0.073744146 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
11 Hb_000735_040 0.0744809288 - - 60S ribosomal protein L32A [Hevea brasiliensis]
12 Hb_000062_650 0.0750919909 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
13 Hb_001634_040 0.075714454 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
14 Hb_008948_050 0.0767527559 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
15 Hb_172221_010 0.0768300691 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
16 Hb_000915_120 0.077155544 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
17 Hb_000645_140 0.0785554979 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
18 Hb_000331_700 0.0795773349 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
19 Hb_002811_080 0.0800020596 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
20 Hb_008921_020 0.0814717672 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_002588_010 Hb_002588_010 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_000042_260--Hb_019516_100 Hb_172221_010 Hb_172221_010 Hb_000042_260--Hb_172221_010 Hb_002909_130 Hb_002909_130 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000042_260--Hb_026398_010 Hb_002660_030 Hb_002660_030 Hb_011311_010--Hb_002660_030 Hb_011311_010--Hb_026398_010 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030 Hb_000735_040 Hb_000735_040 Hb_000093_110--Hb_000735_040 Hb_006478_160 Hb_006478_160 Hb_000093_110--Hb_006478_160 Hb_000645_140 Hb_000645_140 Hb_000093_110--Hb_000645_140 Hb_000567_410 Hb_000567_410 Hb_000093_110--Hb_000567_410 Hb_174865_010 Hb_174865_010 Hb_000093_110--Hb_174865_010 Hb_001158_230 Hb_001158_230 Hb_019516_100--Hb_001158_230 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020 Hb_007944_040--Hb_000111_340 Hb_001268_140 Hb_001268_140 Hb_007944_040--Hb_001268_140 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_001300_270 Hb_001300_270 Hb_007944_040--Hb_001300_270 Hb_000334_210 Hb_000334_210 Hb_000111_340--Hb_000334_210 Hb_010672_060 Hb_010672_060 Hb_000111_340--Hb_010672_060 Hb_007304_070 Hb_007304_070 Hb_000111_340--Hb_007304_070 Hb_003656_070 Hb_003656_070 Hb_000111_340--Hb_003656_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.966 76.6182 117.756 110.316 106.483 122.143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
333.763 725.251 219.509 119.242 63.3632

CAGE analysis