Hb_000111_340

Information

Type -
Description -
Location Contig111: 342686-345262
Sequence    

Annotation

kegg
ID rcu:RCOM_1451950
description peptidyl-prolyl cis-trans isomerase h, ppih, putative (EC:5.2.1.8)
nr
ID XP_002513025.1
description peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
swissprot
ID Q9ZVJ4
description Peptidyl-prolyl cis-trans isomerase CYP22 OS=Arabidopsis thaliana GN=CYP22 PE=2 SV=1
trembl
ID B9RG73
description Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_1451950 PE=3 SV=1
Gene Ontology
ID GO:0005773
description peptidyl-prolyl cis-trans isomerase h

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03408: 342689-345269
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000111_340 0.0 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
2 Hb_007944_040 0.0551645476 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
3 Hb_000334_210 0.0602261536 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
4 Hb_010672_060 0.0661899674 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
5 Hb_002588_010 0.0674601911 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
6 Hb_007304_070 0.0695860088 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
7 Hb_003656_070 0.0734206566 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
8 Hb_004129_040 0.0788638157 - - PREDICTED: protein VACUOLELESS1 [Vitis vinifera]
9 Hb_001300_270 0.081083198 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
10 Hb_002431_050 0.0814196819 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
11 Hb_001268_140 0.0823817358 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002713_070 0.0841316104 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
13 Hb_007416_020 0.08527388 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
14 Hb_000062_390 0.0875272496 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
15 Hb_005211_190 0.0878907751 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
16 Hb_011311_010 0.0884462028 - - 60S ribosomal protein L27C [Hevea brasiliensis]
17 Hb_000881_080 0.0896389407 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000317_070 0.0899297095 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
19 Hb_001780_040 0.0901584064 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
20 Hb_001634_040 0.0902791158 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000111_340 Hb_000111_340 Hb_007944_040 Hb_007944_040 Hb_000111_340--Hb_007944_040 Hb_000334_210 Hb_000334_210 Hb_000111_340--Hb_000334_210 Hb_010672_060 Hb_010672_060 Hb_000111_340--Hb_010672_060 Hb_002588_010 Hb_002588_010 Hb_000111_340--Hb_002588_010 Hb_007304_070 Hb_007304_070 Hb_000111_340--Hb_007304_070 Hb_003656_070 Hb_003656_070 Hb_000111_340--Hb_003656_070 Hb_001268_140 Hb_001268_140 Hb_007944_040--Hb_001268_140 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_007944_040--Hb_002588_010 Hb_001300_270 Hb_001300_270 Hb_007944_040--Hb_001300_270 Hb_011311_010 Hb_011311_010 Hb_007944_040--Hb_011311_010 Hb_000334_210--Hb_003656_070 Hb_001047_230 Hb_001047_230 Hb_000334_210--Hb_001047_230 Hb_003683_110 Hb_003683_110 Hb_000334_210--Hb_003683_110 Hb_001616_040 Hb_001616_040 Hb_000334_210--Hb_001616_040 Hb_009711_020 Hb_009711_020 Hb_000334_210--Hb_009711_020 Hb_002431_050 Hb_002431_050 Hb_010672_060--Hb_002431_050 Hb_005063_050 Hb_005063_050 Hb_010672_060--Hb_005063_050 Hb_000699_160 Hb_000699_160 Hb_010672_060--Hb_000699_160 Hb_003893_050 Hb_003893_050 Hb_010672_060--Hb_003893_050 Hb_007416_020 Hb_007416_020 Hb_010672_060--Hb_007416_020 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_002588_010--Hb_011311_010 Hb_000093_110 Hb_000093_110 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_003053_030 Hb_003053_030 Hb_007304_070--Hb_003053_030 Hb_000881_080 Hb_000881_080 Hb_007304_070--Hb_000881_080 Hb_001633_030 Hb_001633_030 Hb_007304_070--Hb_001633_030 Hb_007304_070--Hb_002431_050 Hb_000365_080 Hb_000365_080 Hb_007304_070--Hb_000365_080 Hb_008173_090 Hb_008173_090 Hb_003656_070--Hb_008173_090 Hb_003656_070--Hb_001047_230 Hb_000574_480 Hb_000574_480 Hb_003656_070--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_003656_070--Hb_029866_060 Hb_000111_330 Hb_000111_330 Hb_003656_070--Hb_000111_330 Hb_004586_320 Hb_004586_320 Hb_003656_070--Hb_004586_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.2145 47.607 46.1161 48.7673 63.031 60.2839
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
189.398 296.918 102.766 63.0268 43.5228

CAGE analysis