Hb_001268_140

Information

Type -
Description -
Location Contig1268: 133645-138801
Sequence    

Annotation

kegg
ID rcu:RCOM_1446310
description hypothetical protein
nr
ID XP_002512885.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RH26
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1446310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08102: 133732-137950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001268_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001300_270 0.0463046437 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
3 Hb_000134_330 0.0581274409 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
4 Hb_007944_040 0.0600361969 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
5 Hb_001045_080 0.0642844805 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
6 Hb_155764_020 0.0671479287 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
7 Hb_001269_270 0.0735279785 - - 60S ribosomal protein L27B [Hevea brasiliensis]
8 Hb_000025_600 0.0743282865 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
9 Hb_004724_160 0.0802217937 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
10 Hb_005590_020 0.0805486108 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
11 Hb_002107_120 0.082024902 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
12 Hb_000111_340 0.0823817358 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
13 Hb_003125_150 0.0835387696 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
14 Hb_000970_010 0.0837216397 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
15 Hb_000545_150 0.083729857 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
16 Hb_005701_020 0.0851301834 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
17 Hb_002296_060 0.0854230564 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
18 Hb_008173_090 0.0855041756 - - glutathione peroxidase, putative [Ricinus communis]
19 Hb_001433_050 0.0858020851 - - 60S ribosomal protein L18, putative [Ricinus communis]
20 Hb_000099_060 0.0861994663 - - hypothetical protein JCGZ_23948 [Jatropha curcas]

Gene co-expression network

sample Hb_001268_140 Hb_001268_140 Hb_001300_270 Hb_001300_270 Hb_001268_140--Hb_001300_270 Hb_000134_330 Hb_000134_330 Hb_001268_140--Hb_000134_330 Hb_007944_040 Hb_007944_040 Hb_001268_140--Hb_007944_040 Hb_001045_080 Hb_001045_080 Hb_001268_140--Hb_001045_080 Hb_155764_020 Hb_155764_020 Hb_001268_140--Hb_155764_020 Hb_001269_270 Hb_001269_270 Hb_001268_140--Hb_001269_270 Hb_001300_270--Hb_000134_330 Hb_001300_270--Hb_007944_040 Hb_001300_270--Hb_155764_020 Hb_002296_060 Hb_002296_060 Hb_001300_270--Hb_002296_060 Hb_000111_340 Hb_000111_340 Hb_001300_270--Hb_000111_340 Hb_000025_600 Hb_000025_600 Hb_000134_330--Hb_000025_600 Hb_000134_330--Hb_002296_060 Hb_000099_060 Hb_000099_060 Hb_000134_330--Hb_000099_060 Hb_008173_090 Hb_008173_090 Hb_000134_330--Hb_008173_090 Hb_007944_040--Hb_000111_340 Hb_007575_070 Hb_007575_070 Hb_007944_040--Hb_007575_070 Hb_002588_010 Hb_002588_010 Hb_007944_040--Hb_002588_010 Hb_011311_010 Hb_011311_010 Hb_007944_040--Hb_011311_010 Hb_003125_150 Hb_003125_150 Hb_001045_080--Hb_003125_150 Hb_009851_100 Hb_009851_100 Hb_001045_080--Hb_009851_100 Hb_000312_090 Hb_000312_090 Hb_001045_080--Hb_000312_090 Hb_001045_080--Hb_001269_270 Hb_000046_260 Hb_000046_260 Hb_001045_080--Hb_000046_260 Hb_000563_240 Hb_000563_240 Hb_155764_020--Hb_000563_240 Hb_001248_080 Hb_001248_080 Hb_155764_020--Hb_001248_080 Hb_155764_020--Hb_000099_060 Hb_155764_020--Hb_000134_330 Hb_001269_270--Hb_003125_150 Hb_001638_260 Hb_001638_260 Hb_001269_270--Hb_001638_260 Hb_000617_090 Hb_000617_090 Hb_001269_270--Hb_000617_090 Hb_000526_150 Hb_000526_150 Hb_001269_270--Hb_000526_150 Hb_001269_270--Hb_009851_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.2202 13.1082 17.6335 11.9046 25.5738 36.9691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.2578 110.353 43.5187 23.8309 12.7355

CAGE analysis