Hb_000046_260

Information

Type -
Description -
Location Contig46: 215802-218920
Sequence    

Annotation

kegg
ID rcu:RCOM_0679650
description acyl carrier protein, putative (EC:1.3.1.74)
nr
ID XP_002516860.1
description acyl carrier protein, putative [Ricinus communis]
swissprot
ID P52414
description Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1
trembl
ID B9RSZ1
description Acyl carrier protein OS=Ricinus communis GN=RCOM_0679650 PE=3 SV=1
Gene Ontology
ID GO:0009507
description acyl carrier protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43629: 215901-218822
cDNA
(Sanger)
(ID:Location)		 006_B18.ab1: 215954-218819 , 009_K06.ab1: 215974-218822 , 015_F10.ab1: 216064-218822 , 022_B18.ab1: 215970-218793 , 028_C20.ab1: 216021-218819 , 030_I12.ab1: 215922-218819 , 031_D17.ab1: 215934-218819 , 033_P06.ab1: 215988-218819 , 042_F16.ab1: 215957-218793 , 044_I13.ab1: 215937-218822

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_260 0.0 - - acyl carrier protein, putative [Ricinus communis]
2 Hb_001045_080 0.0745898647 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
3 Hb_004116_080 0.0928807856 - - ATATH9, putative [Ricinus communis]
4 Hb_000312_090 0.0953704392 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
5 Hb_000045_190 0.0960020242 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
6 Hb_001687_040 0.0995320686 - - actin-depolymerizing factor [Hevea brasiliensis]
7 Hb_002214_050 0.1020074506 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
8 Hb_003125_150 0.1048384967 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
9 Hb_000212_260 0.10510814 - - acyl-carrier-protein [Triadica sebifera]
10 Hb_002571_020 0.1054396951 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
11 Hb_001080_080 0.1062344627 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
12 Hb_009851_100 0.106849236 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
13 Hb_000922_170 0.1068581032 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
14 Hb_000188_130 0.1090205988 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
15 Hb_002897_080 0.1120987268 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
16 Hb_000161_050 0.1130700233 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003988_040 0.1133246395 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
18 Hb_002781_020 0.1160437766 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
19 Hb_000120_750 0.1186400544 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
20 Hb_023386_010 0.1202043563 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000046_260 Hb_000046_260 Hb_001045_080 Hb_001045_080 Hb_000046_260--Hb_001045_080 Hb_004116_080 Hb_004116_080 Hb_000046_260--Hb_004116_080 Hb_000312_090 Hb_000312_090 Hb_000046_260--Hb_000312_090 Hb_000045_190 Hb_000045_190 Hb_000046_260--Hb_000045_190 Hb_001687_040 Hb_001687_040 Hb_000046_260--Hb_001687_040 Hb_002214_050 Hb_002214_050 Hb_000046_260--Hb_002214_050 Hb_003125_150 Hb_003125_150 Hb_001045_080--Hb_003125_150 Hb_009851_100 Hb_009851_100 Hb_001045_080--Hb_009851_100 Hb_001268_140 Hb_001268_140 Hb_001045_080--Hb_001268_140 Hb_001045_080--Hb_000312_090 Hb_001269_270 Hb_001269_270 Hb_001045_080--Hb_001269_270 Hb_004116_080--Hb_000045_190 Hb_003018_120 Hb_003018_120 Hb_004116_080--Hb_003018_120 Hb_000798_030 Hb_000798_030 Hb_004116_080--Hb_000798_030 Hb_000160_130 Hb_000160_130 Hb_004116_080--Hb_000160_130 Hb_000188_130 Hb_000188_130 Hb_004116_080--Hb_000188_130 Hb_000617_090 Hb_000617_090 Hb_000312_090--Hb_000617_090 Hb_001221_310 Hb_001221_310 Hb_000312_090--Hb_001221_310 Hb_000312_090--Hb_009851_100 Hb_000312_090--Hb_003125_150 Hb_002835_320 Hb_002835_320 Hb_000312_090--Hb_002835_320 Hb_000634_050 Hb_000634_050 Hb_000045_190--Hb_000634_050 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_001153_080 Hb_001153_080 Hb_000045_190--Hb_001153_080 Hb_000045_190--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000045_190--Hb_002529_100 Hb_006573_220 Hb_006573_220 Hb_001687_040--Hb_006573_220 Hb_002097_060 Hb_002097_060 Hb_001687_040--Hb_002097_060 Hb_001191_090 Hb_001191_090 Hb_001687_040--Hb_001191_090 Hb_000069_100 Hb_000069_100 Hb_001687_040--Hb_000069_100 Hb_000272_070 Hb_000272_070 Hb_001687_040--Hb_000272_070 Hb_003053_030 Hb_003053_030 Hb_001687_040--Hb_003053_030 Hb_010172_030 Hb_010172_030 Hb_002214_050--Hb_010172_030 Hb_001437_220 Hb_001437_220 Hb_002214_050--Hb_001437_220 Hb_004994_260 Hb_004994_260 Hb_002214_050--Hb_004994_260 Hb_000333_090 Hb_000333_090 Hb_002214_050--Hb_000333_090 Hb_000362_210 Hb_000362_210 Hb_002214_050--Hb_000362_210 Hb_000907_090 Hb_000907_090 Hb_002214_050--Hb_000907_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.918 17.1366 65.6168 69.4277 72.6182 118.109
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
375.576 383.773 154.635 32.6793 29.2891

CAGE analysis