Hb_002835_320

Information

Type -
Description -
Location Contig2835: 269841-270281
Sequence    

Annotation

kegg
ID csv:101228988
description 60S ribosomal protein L27a-3-like
nr
ID ADR71245.1
description 60S ribosomal protein L27B [Hevea brasiliensis]
swissprot
ID P49637
description 60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2
trembl
ID I3NMK8
description 60S ribosomal protein L27B OS=Hevea brasiliensis GN=RPL27B PE=2 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l27a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29652: 269795-270662
cDNA
(Sanger)
(ID:Location)		 021_H20.ab1: 269795-270419 , 023_E19.ab1: 269794-270155 , 027_B08.ab1: 269798-270200 , 034_B01.ab1: 269794-270419 , 041_F23.ab1: 269794-270202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_320 0.0 - - 60S ribosomal protein L27B [Hevea brasiliensis]
2 Hb_000163_130 0.0539885801 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
3 Hb_009851_100 0.0656479608 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
4 Hb_148930_010 0.0672532149 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
5 Hb_003053_030 0.0695974126 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
6 Hb_000312_090 0.071541106 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
7 Hb_001433_050 0.0732101928 - - 60S ribosomal protein L18, putative [Ricinus communis]
8 Hb_026398_010 0.0743755793 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
9 Hb_000085_330 0.0782509538 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
10 Hb_011161_050 0.0783290106 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
11 Hb_002660_030 0.0784241235 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001269_270 0.0791002077 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_000617_090 0.0824492844 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
14 Hb_003226_210 0.0830569806 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
15 Hb_001045_080 0.0835673554 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
16 Hb_001279_360 0.0838486117 - - protein with unknown function [Ricinus communis]
17 Hb_003376_130 0.084248999 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
18 Hb_001780_050 0.0844685629 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
19 Hb_012265_010 0.0845765064 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
20 Hb_005590_020 0.0850179862 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]

Gene co-expression network

sample Hb_002835_320 Hb_002835_320 Hb_000163_130 Hb_000163_130 Hb_002835_320--Hb_000163_130 Hb_009851_100 Hb_009851_100 Hb_002835_320--Hb_009851_100 Hb_148930_010 Hb_148930_010 Hb_002835_320--Hb_148930_010 Hb_003053_030 Hb_003053_030 Hb_002835_320--Hb_003053_030 Hb_000312_090 Hb_000312_090 Hb_002835_320--Hb_000312_090 Hb_001433_050 Hb_001433_050 Hb_002835_320--Hb_001433_050 Hb_001780_050 Hb_001780_050 Hb_000163_130--Hb_001780_050 Hb_000905_180 Hb_000905_180 Hb_000163_130--Hb_000905_180 Hb_004754_070 Hb_004754_070 Hb_000163_130--Hb_004754_070 Hb_000236_150 Hb_000236_150 Hb_000163_130--Hb_000236_150 Hb_000163_130--Hb_003053_030 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_009851_100--Hb_000312_090 Hb_001045_080 Hb_001045_080 Hb_009851_100--Hb_001045_080 Hb_000526_150 Hb_000526_150 Hb_009851_100--Hb_000526_150 Hb_001269_270 Hb_001269_270 Hb_009851_100--Hb_001269_270 Hb_148930_010--Hb_001433_050 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148200_010 Hb_148200_010 Hb_148930_010--Hb_148200_010 Hb_003398_120 Hb_003398_120 Hb_148930_010--Hb_003398_120 Hb_001191_090 Hb_001191_090 Hb_003053_030--Hb_001191_090 Hb_000181_300 Hb_000181_300 Hb_003053_030--Hb_000181_300 Hb_003053_030--Hb_148200_010 Hb_000364_030 Hb_000364_030 Hb_003053_030--Hb_000364_030 Hb_004156_040 Hb_004156_040 Hb_003053_030--Hb_004156_040 Hb_003994_040 Hb_003994_040 Hb_003053_030--Hb_003994_040 Hb_000617_090 Hb_000617_090 Hb_000312_090--Hb_000617_090 Hb_001221_310 Hb_001221_310 Hb_000312_090--Hb_001221_310 Hb_003125_150 Hb_003125_150 Hb_000312_090--Hb_003125_150 Hb_000312_090--Hb_001045_080 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
493.397 115.799 178.149 370.936 405.338 605.186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1317.1 2129.97 808.313 453.879 189.367

CAGE analysis