Hb_000024_030

Information

Type -
Description -
Location Contig24: 14014-30353
Sequence    

Annotation

kegg
ID rcu:RCOM_0274730
description Tetratricopeptide repeat protein, putative
nr
ID XP_011038700.1
description PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
swissprot
ID Q5BK48
description Tetratricopeptide repeat protein 5 OS=Rattus norvegicus GN=Ttc5 PE=2 SV=1
trembl
ID A0A067KRS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09273 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tetratricopeptide repeat protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25112: 15130-30040 , PASA_asmbl_25113: 14319-14600 , PASA_asmbl_25114: 14365-16628 , PASA_asmbl_25115: 18841-19127 , PASA_asmbl_25117: 29823-30111
cDNA
(Sanger)
(ID:Location)		 037_K12.ab1: 14365-15917 , 037_K13.ab1: 14365-15949 , 037_M10.ab1: 14367-15906

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000024_030 0.0 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
2 Hb_000975_110 0.042651997 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
3 Hb_001433_050 0.0585228856 - - 60S ribosomal protein L18, putative [Ricinus communis]
4 Hb_124755_010 0.0692013779 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
5 Hb_004032_100 0.0735854213 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
6 Hb_006816_530 0.0746130836 - - 60S ribosomal protein L18, putative [Ricinus communis]
7 Hb_002471_080 0.0751647329 - - oxidoreductase, putative [Ricinus communis]
8 Hb_000086_550 0.0764625778 - - Os02g0814700 [Oryza sativa Japonica Group]
9 Hb_011161_050 0.0770456881 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
10 Hb_010812_010 0.0787385462 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
11 Hb_001505_020 0.0790501563 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
12 Hb_001829_060 0.0794796838 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
13 Hb_000751_130 0.0795304345 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
14 Hb_000087_020 0.0799418009 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
15 Hb_000364_030 0.0800440771 - - RNA binding protein, putative [Ricinus communis]
16 Hb_000172_030 0.0801409038 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
17 Hb_001307_090 0.0804990907 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
18 Hb_130291_010 0.0818884827 - - PREDICTED: protein PEROXIN-4 isoform X1 [Jatropha curcas]
19 Hb_008511_110 0.0827174406 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
20 Hb_004336_050 0.0844997032 - - hypothetical protein JCGZ_26651 [Jatropha curcas]

Gene co-expression network

sample Hb_000024_030 Hb_000024_030 Hb_000975_110 Hb_000975_110 Hb_000024_030--Hb_000975_110 Hb_001433_050 Hb_001433_050 Hb_000024_030--Hb_001433_050 Hb_124755_010 Hb_124755_010 Hb_000024_030--Hb_124755_010 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_002471_080 Hb_002471_080 Hb_000024_030--Hb_002471_080 Hb_011161_050 Hb_011161_050 Hb_000975_110--Hb_011161_050 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_003561_030 Hb_003561_030 Hb_000975_110--Hb_003561_030 Hb_001307_090 Hb_001307_090 Hb_000975_110--Hb_001307_090 Hb_000975_110--Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010 Hb_124755_010--Hb_002471_080 Hb_124755_010--Hb_001307_090 Hb_004374_140 Hb_004374_140 Hb_124755_010--Hb_004374_140 Hb_124755_010--Hb_000975_110 Hb_000122_020 Hb_000122_020 Hb_124755_010--Hb_000122_020 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_180301_010 Hb_180301_010 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_001814_050 Hb_001814_050 Hb_006816_530--Hb_001814_050 Hb_001505_020 Hb_001505_020 Hb_006816_530--Hb_001505_020 Hb_003226_210 Hb_003226_210 Hb_006816_530--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_006816_530--Hb_001214_160 Hb_002713_070 Hb_002713_070 Hb_006816_530--Hb_002713_070 Hb_001421_060 Hb_001421_060 Hb_006816_530--Hb_001421_060 Hb_000046_290 Hb_000046_290 Hb_002471_080--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_002471_080--Hb_001360_050 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.32895 2.4684 2.91341 7.26516 5.99026 14.0197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.4828 22.975 14.832 8.18624 3.56192

CAGE analysis