Hb_003226_210

Information

Type -
Description -
Location Contig3226: 159501-160990
Sequence    

Annotation

kegg
ID pmum:103331777
description 60S ribosomal protein L22-3
nr
ID XP_007218604.1
description hypothetical protein PRUPE_ppa013414mg [Prunus persica]
swissprot
ID Q9M9W1
description 60S ribosomal protein L22-2 OS=Arabidopsis thaliana GN=RPL22B PE=2 SV=1
trembl
ID M5XE65
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013414mg PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l22-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34186: 159563-160999
cDNA
(Sanger)
(ID:Location)		 026_G08.ab1: 160865-160999 , 048_E09.ab1: 159710-160999

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_210 0.0 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
2 Hb_001214_160 0.0460319264 - - 60S ribosomal protein L27B [Hevea brasiliensis]
3 Hb_000283_110 0.056376772 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
4 Hb_006816_530 0.0657438187 - - 60S ribosomal protein L18, putative [Ricinus communis]
5 Hb_002660_030 0.0659529756 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000134_070 0.0679610633 - - 60S ribosomal protein L6, putative [Ricinus communis]
7 Hb_000363_480 0.0692263794 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
8 Hb_001638_260 0.0724944119 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
9 Hb_000617_090 0.0727971976 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
10 Hb_002431_050 0.0732160622 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
11 Hb_001269_270 0.0736474762 - - 60S ribosomal protein L27B [Hevea brasiliensis]
12 Hb_003893_050 0.0739438349 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
13 Hb_002713_070 0.0754140874 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
14 Hb_000136_170 0.0757075837 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
15 Hb_001505_020 0.0760125798 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
16 Hb_010672_060 0.0762982852 - - gaba(A) receptor-associated protein, putative [Ricinus communis]
17 Hb_004125_110 0.0764590363 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
18 Hb_026398_010 0.0781493125 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
19 Hb_009554_010 0.0787795646 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
20 Hb_007416_020 0.0803645342 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]

Gene co-expression network

sample Hb_003226_210 Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_003226_210--Hb_001214_160 Hb_000283_110 Hb_000283_110 Hb_003226_210--Hb_000283_110 Hb_006816_530 Hb_006816_530 Hb_003226_210--Hb_006816_530 Hb_002660_030 Hb_002660_030 Hb_003226_210--Hb_002660_030 Hb_000134_070 Hb_000134_070 Hb_003226_210--Hb_000134_070 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_001214_160--Hb_006816_530 Hb_001214_160--Hb_000363_480 Hb_000102_020 Hb_000102_020 Hb_001214_160--Hb_000102_020 Hb_011628_040 Hb_011628_040 Hb_001214_160--Hb_011628_040 Hb_004125_110 Hb_004125_110 Hb_001214_160--Hb_004125_110 Hb_003893_050 Hb_003893_050 Hb_000283_110--Hb_003893_050 Hb_002431_050 Hb_002431_050 Hb_000283_110--Hb_002431_050 Hb_001638_260 Hb_001638_260 Hb_000283_110--Hb_001638_260 Hb_000029_200 Hb_000029_200 Hb_000283_110--Hb_000029_200 Hb_000441_190 Hb_000441_190 Hb_000283_110--Hb_000441_190 Hb_001814_050 Hb_001814_050 Hb_006816_530--Hb_001814_050 Hb_001505_020 Hb_001505_020 Hb_006816_530--Hb_001505_020 Hb_002713_070 Hb_002713_070 Hb_006816_530--Hb_002713_070 Hb_001421_060 Hb_001421_060 Hb_006816_530--Hb_001421_060 Hb_002660_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002660_030--Hb_011311_010 Hb_002660_030--Hb_000134_070 Hb_026398_010 Hb_026398_010 Hb_002660_030--Hb_026398_010 Hb_002925_030 Hb_002925_030 Hb_002660_030--Hb_002925_030 Hb_000136_170 Hb_000136_170 Hb_000134_070--Hb_000136_170 Hb_004157_030 Hb_004157_030 Hb_000134_070--Hb_004157_030 Hb_086639_090 Hb_086639_090 Hb_000134_070--Hb_086639_090 Hb_000134_070--Hb_001505_020 Hb_000574_480 Hb_000574_480 Hb_000363_480--Hb_000574_480 Hb_000215_060 Hb_000215_060 Hb_000363_480--Hb_000215_060 Hb_001998_050 Hb_001998_050 Hb_000363_480--Hb_001998_050 Hb_003656_070 Hb_003656_070 Hb_000363_480--Hb_003656_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
236.877 111.455 132.361 248.486 158.646 336.254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
526.422 932.285 357.118 192.803 99.0281

CAGE analysis