Hb_000215_060

Information

Type -
Description -
Location Contig215: 42148-42828
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09490g
description hypothetical protein
nr
ID XP_012076870.1
description PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
swissprot
ID Q9SP35
description Mitochondrial import inner membrane translocase subunit TIM17-2 OS=Arabidopsis thaliana GN=TIM17-2 PE=1 SV=2
trembl
ID A0A067KNE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07366 PE=4 SV=1
Gene Ontology
ID GO:0005744
description mitochondrial import inner membrane translocase subunit tim17-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 047_J09.ab1: 42181-42887 , 047_K15.ab1: 42337-42883

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000215_060 0.0 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
2 Hb_000363_480 0.0694443328 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
3 Hb_001565_080 0.0713941674 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM17-2-like [Jatropha curcas]
4 Hb_000175_060 0.0719472506 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
5 Hb_000496_120 0.0722942041 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
6 Hb_000349_290 0.0730538029 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
7 Hb_011173_050 0.0800808329 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
8 Hb_005568_120 0.084029738 - - Prephenate dehydratase [Hevea brasiliensis]
9 Hb_032260_030 0.0862344812 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
10 Hb_000009_460 0.0895124755 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005883_100 0.0914191286 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
12 Hb_011671_100 0.0924014411 - - 60S ribosomal protein L15 [Populus trichocarpa]
13 Hb_000417_360 0.0937267963 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
14 Hb_001998_050 0.0947557082 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
15 Hb_006478_150 0.0962929005 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
16 Hb_000264_090 0.0976436192 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
17 Hb_002925_030 0.0977079043 - - 40S ribosomal protein S16B [Hevea brasiliensis]
18 Hb_002374_390 0.1006977835 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
19 Hb_012114_040 0.100744315 - - DNA binding protein, putative [Ricinus communis]
20 Hb_033642_080 0.1009633271 - - V-type proton ATPase subunit E [Hevea brasiliensis]

Gene co-expression network

sample Hb_000215_060 Hb_000215_060 Hb_000363_480 Hb_000363_480 Hb_000215_060--Hb_000363_480 Hb_001565_080 Hb_001565_080 Hb_000215_060--Hb_001565_080 Hb_000175_060 Hb_000175_060 Hb_000215_060--Hb_000175_060 Hb_000496_120 Hb_000496_120 Hb_000215_060--Hb_000496_120 Hb_000349_290 Hb_000349_290 Hb_000215_060--Hb_000349_290 Hb_011173_050 Hb_011173_050 Hb_000215_060--Hb_011173_050 Hb_000574_480 Hb_000574_480 Hb_000363_480--Hb_000574_480 Hb_003226_210 Hb_003226_210 Hb_000363_480--Hb_003226_210 Hb_001998_050 Hb_001998_050 Hb_000363_480--Hb_001998_050 Hb_003656_070 Hb_003656_070 Hb_000363_480--Hb_003656_070 Hb_001214_160 Hb_001214_160 Hb_000363_480--Hb_001214_160 Hb_001565_080--Hb_000349_290 Hb_001565_080--Hb_000363_480 Hb_032260_030 Hb_032260_030 Hb_001565_080--Hb_032260_030 Hb_000331_700 Hb_000331_700 Hb_001565_080--Hb_000331_700 Hb_000881_080 Hb_000881_080 Hb_001565_080--Hb_000881_080 Hb_000175_060--Hb_011173_050 Hb_000086_280 Hb_000086_280 Hb_000175_060--Hb_000086_280 Hb_004586_320 Hb_004586_320 Hb_000175_060--Hb_004586_320 Hb_005568_120 Hb_005568_120 Hb_000175_060--Hb_005568_120 Hb_005883_100 Hb_005883_100 Hb_000175_060--Hb_005883_100 Hb_091433_020 Hb_091433_020 Hb_000496_120--Hb_091433_020 Hb_033642_080 Hb_033642_080 Hb_000496_120--Hb_033642_080 Hb_004216_050 Hb_004216_050 Hb_000496_120--Hb_004216_050 Hb_001814_050 Hb_001814_050 Hb_000496_120--Hb_001814_050 Hb_005305_150 Hb_005305_150 Hb_000496_120--Hb_005305_150 Hb_003185_050 Hb_003185_050 Hb_000349_290--Hb_003185_050 Hb_000349_290--Hb_000363_480 Hb_000905_180 Hb_000905_180 Hb_000349_290--Hb_000905_180 Hb_000349_290--Hb_011173_050 Hb_011173_050--Hb_005568_120 Hb_000111_330 Hb_000111_330 Hb_011173_050--Hb_000111_330 Hb_000368_010 Hb_000368_010 Hb_011173_050--Hb_000368_010 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.8 40.3878 20.9801 37.7499 28.1952 42.4589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.2739 145.875 85.4673 54.741 15.5021

CAGE analysis