Hb_000368_010

Information

Type -
Description -
Location Contig368: 5247-8426
Sequence    

Annotation

kegg
ID rcu:RCOM_1595790
description Ubiquitin-conjugating enzyme E2-18 kDa, putative (EC:6.3.2.19)
nr
ID XP_012071941.1
description PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
swissprot
ID Q9FMM0
description Probable ubiquitin-conjugating enzyme E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1
trembl
ID A0A067KQZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04487 PE=3 SV=1
Gene Ontology
ID GO:0016874
description probable ubiquitin-conjugating enzyme e2 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37804: 5193-8407
cDNA
(Sanger)
(ID:Location)		 002_B10.ab1: 5296-8381 , 009_D02.ab1: 5193-8385 , 011_I23.ab1: 5271-8404 , 013_J17.ab1: 5294-8373 , 020_N09.ab1: 5193-8385 , 023_N02.ab1: 5193-8302 , 025_P12.ab1: 5294-8373 , 053_H16.ab1: 5193-8389

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000368_010 0.0 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 18 [Jatropha curcas]
2 Hb_000347_410 0.0758128935 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
3 Hb_011173_050 0.0796575452 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
4 Hb_000111_330 0.0800875263 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
5 Hb_001059_030 0.0835017943 - - PREDICTED: F-box protein At5g03100-like [Solanum lycopersicum]
6 Hb_002851_020 0.0835683174 - - PREDICTED: uncharacterized protein LOC105633802 [Jatropha curcas]
7 Hb_004586_320 0.0860050859 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
8 Hb_003656_070 0.0884724802 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
9 Hb_002110_120 0.0912364077 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
10 Hb_000574_480 0.0913006417 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
11 Hb_012675_060 0.0965642097 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
12 Hb_002061_040 0.0976271521 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
13 Hb_029866_060 0.09863006 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
14 Hb_000146_020 0.0990001662 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
15 Hb_000417_360 0.1007966669 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
16 Hb_000009_460 0.1008155263 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000334_210 0.1013644582 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
18 Hb_001722_100 0.1024996611 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000175_060 0.1044969995 - - PREDICTED: uncharacterized protein LOC105634837 [Jatropha curcas]
20 Hb_002163_020 0.1049536314 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000368_010 Hb_000368_010 Hb_000347_410 Hb_000347_410 Hb_000368_010--Hb_000347_410 Hb_011173_050 Hb_011173_050 Hb_000368_010--Hb_011173_050 Hb_000111_330 Hb_000111_330 Hb_000368_010--Hb_000111_330 Hb_001059_030 Hb_001059_030 Hb_000368_010--Hb_001059_030 Hb_002851_020 Hb_002851_020 Hb_000368_010--Hb_002851_020 Hb_004586_320 Hb_004586_320 Hb_000368_010--Hb_004586_320 Hb_000146_020 Hb_000146_020 Hb_000347_410--Hb_000146_020 Hb_029866_020 Hb_029866_020 Hb_000347_410--Hb_029866_020 Hb_000025_120 Hb_000025_120 Hb_000347_410--Hb_000025_120 Hb_003376_030 Hb_003376_030 Hb_000347_410--Hb_003376_030 Hb_000347_410--Hb_004586_320 Hb_000240_090 Hb_000240_090 Hb_000347_410--Hb_000240_090 Hb_005568_120 Hb_005568_120 Hb_011173_050--Hb_005568_120 Hb_000175_060 Hb_000175_060 Hb_011173_050--Hb_000175_060 Hb_011173_050--Hb_000111_330 Hb_000215_060 Hb_000215_060 Hb_011173_050--Hb_000215_060 Hb_000373_130 Hb_000373_130 Hb_011173_050--Hb_000373_130 Hb_003656_070 Hb_003656_070 Hb_000111_330--Hb_003656_070 Hb_000574_480 Hb_000574_480 Hb_000111_330--Hb_000574_480 Hb_029866_060 Hb_029866_060 Hb_000111_330--Hb_029866_060 Hb_000201_120 Hb_000201_120 Hb_000111_330--Hb_000201_120 Hb_129204_030 Hb_129204_030 Hb_000111_330--Hb_129204_030 Hb_004635_100 Hb_004635_100 Hb_001059_030--Hb_004635_100 Hb_010422_060 Hb_010422_060 Hb_001059_030--Hb_010422_060 Hb_012053_070 Hb_012053_070 Hb_001059_030--Hb_012053_070 Hb_000062_220 Hb_000062_220 Hb_001059_030--Hb_000062_220 Hb_001059_030--Hb_000240_090 Hb_000059_370 Hb_000059_370 Hb_001059_030--Hb_000059_370 Hb_002061_040 Hb_002061_040 Hb_002851_020--Hb_002061_040 Hb_002851_020--Hb_011173_050 Hb_002676_090 Hb_002676_090 Hb_002851_020--Hb_002676_090 Hb_005736_060 Hb_005736_060 Hb_002851_020--Hb_005736_060 Hb_020400_050 Hb_020400_050 Hb_002851_020--Hb_020400_050 Hb_012675_060 Hb_012675_060 Hb_004586_320--Hb_012675_060 Hb_004586_320--Hb_003656_070 Hb_007943_090 Hb_007943_090 Hb_004586_320--Hb_007943_090 Hb_001998_050 Hb_001998_050 Hb_004586_320--Hb_001998_050 Hb_004586_320--Hb_000574_480 Hb_148200_010 Hb_148200_010 Hb_004586_320--Hb_148200_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.2181 73.7007 39.1029 56.5418 83.0293 52.3235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
179.351 193.841 137.53 77.7057 35.2042

CAGE analysis