Hb_003376_030

Information

Type -
Description -
Location Contig3376: 24867-30854
Sequence    

Annotation

kegg
ID vvi:100258470
description ribonuclease P protein subunit p29
nr
ID XP_012082294.1
description PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
swissprot
ID Q5R7B0
description Ribonuclease P protein subunit p29 OS=Pongo abelii GN=POP4 PE=2 SV=1
trembl
ID A0A067JYV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16466 PE=4 SV=1
Gene Ontology
ID GO:0000172
description rnases mrp p kda subunit isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35319: 24895-31102
cDNA
(Sanger)
(ID:Location)		 003_E17.ab1: 27171-30842 , 009_H23.ab1: 27814-31100 , 033_I12.ab1: 27259-30832

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003376_030 0.0 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
2 Hb_003455_040 0.0525790818 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
3 Hb_002097_060 0.0538528878 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_148200_010 0.0572426372 - - hypothetical protein 33 [Hevea brasiliensis]
5 Hb_000146_020 0.0575814087 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
6 Hb_001160_030 0.0580352501 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
7 Hb_002027_210 0.0598662216 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
8 Hb_001191_090 0.064529682 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
9 Hb_000347_410 0.0660043549 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
10 Hb_002918_200 0.0676192878 - - -
11 Hb_000173_220 0.0692828699 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
12 Hb_006573_220 0.0715850667 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
13 Hb_007479_020 0.072840845 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
14 Hb_005731_170 0.0732237875 - - hypothetical protein PRUPE_ppa011750mg [Prunus persica]
15 Hb_007943_090 0.0740733112 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
16 Hb_004586_320 0.074308459 - - PREDICTED: bet1-like protein At4g14600 [Jatropha curcas]
17 Hb_000329_330 0.0743379929 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
18 Hb_000134_330 0.0743571898 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
19 Hb_000834_270 0.0780428015 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
20 Hb_007382_150 0.0788636709 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_003376_030 Hb_003376_030 Hb_003455_040 Hb_003455_040 Hb_003376_030--Hb_003455_040 Hb_002097_060 Hb_002097_060 Hb_003376_030--Hb_002097_060 Hb_148200_010 Hb_148200_010 Hb_003376_030--Hb_148200_010 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_002027_210 Hb_002027_210 Hb_003376_030--Hb_002027_210 Hb_003994_040 Hb_003994_040 Hb_003455_040--Hb_003994_040 Hb_000173_220 Hb_000173_220 Hb_003455_040--Hb_000173_220 Hb_012753_160 Hb_012753_160 Hb_003455_040--Hb_012753_160 Hb_003455_040--Hb_002027_210 Hb_003455_040--Hb_002097_060 Hb_000069_100 Hb_000069_100 Hb_002097_060--Hb_000069_100 Hb_006573_220 Hb_006573_220 Hb_002097_060--Hb_006573_220 Hb_001575_020 Hb_001575_020 Hb_002097_060--Hb_001575_020 Hb_002097_060--Hb_148200_010 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_001433_050 Hb_001433_050 Hb_148200_010--Hb_001433_050 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_000347_410 Hb_000347_410 Hb_000146_020--Hb_000347_410 Hb_000834_270 Hb_000834_270 Hb_000146_020--Hb_000834_270 Hb_007943_090 Hb_007943_090 Hb_000146_020--Hb_007943_090 Hb_000146_020--Hb_002027_210 Hb_008289_060 Hb_008289_060 Hb_000146_020--Hb_008289_060 Hb_001160_030--Hb_002097_060 Hb_001616_060 Hb_001616_060 Hb_001160_030--Hb_001616_060 Hb_001160_030--Hb_001575_020 Hb_001160_030--Hb_000146_020 Hb_001616_030 Hb_001616_030 Hb_001160_030--Hb_001616_030 Hb_002027_210--Hb_000173_220 Hb_005432_030 Hb_005432_030 Hb_002027_210--Hb_005432_030 Hb_002027_210--Hb_001191_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8765 4.93068 6.01084 5.82293 9.64518 12.1145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.3398 33.3941 24.5093 7.21643 5.36533

CAGE analysis