Hb_001433_050

Information

Type -
Description -
Location Contig1433: 65632-72098
Sequence    

Annotation

kegg
ID rcu:RCOM_1433890
description 60S ribosomal protein L18, putative
nr
ID XP_002512455.1
description 60S ribosomal protein L18, putative [Ricinus communis]
swissprot
ID P42791
description 60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=1 SV=2
trembl
ID B9RFD6
description 60S ribosomal protein L18, putative OS=Ricinus communis GN=RCOM_1433890 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11393: 65635-69324 , PASA_asmbl_11394: 65635-69324 , PASA_asmbl_11395: 67706-67919 , PASA_asmbl_11396: 70036-72125
cDNA
(Sanger)
(ID:Location)		 033_M20.ab1: 70036-71847 , 052_B03.ab1: 70036-71850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001433_050 0.0 - - 60S ribosomal protein L18, putative [Ricinus communis]
2 Hb_001383_060 0.0583100896 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
3 Hb_000024_030 0.0585228856 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
4 Hb_148200_010 0.0604743151 - - hypothetical protein 33 [Hevea brasiliensis]
5 Hb_003927_130 0.0629667019 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
6 Hb_007479_020 0.0657469546 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
7 Hb_148930_010 0.0679951613 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
8 Hb_001505_020 0.068391427 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
9 Hb_002835_320 0.0732101928 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_001279_360 0.0737535942 - - protein with unknown function [Ricinus communis]
11 Hb_012265_010 0.0744298071 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
12 Hb_006816_530 0.0745779987 - - 60S ribosomal protein L18, putative [Ricinus communis]
13 Hb_003086_100 0.0746076498 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
14 Hb_001998_050 0.0750519819 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
15 Hb_001829_060 0.0756322864 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
16 Hb_000120_750 0.0757720417 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
17 Hb_004837_140 0.0772131578 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
18 Hb_000975_110 0.0778072541 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
19 Hb_011161_050 0.0778219484 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
20 Hb_003053_030 0.0788644797 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001433_050 Hb_001433_050 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_000024_030 Hb_000024_030 Hb_001433_050--Hb_000024_030 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010 Hb_001383_060--Hb_003927_130 Hb_001584_070 Hb_001584_070 Hb_001383_060--Hb_001584_070 Hb_000340_140 Hb_000340_140 Hb_001383_060--Hb_000340_140 Hb_001383_060--Hb_007479_020 Hb_000120_750 Hb_000120_750 Hb_001383_060--Hb_000120_750 Hb_000975_110 Hb_000975_110 Hb_000024_030--Hb_000975_110 Hb_124755_010 Hb_124755_010 Hb_000024_030--Hb_124755_010 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_002471_080 Hb_002471_080 Hb_000024_030--Hb_002471_080 Hb_001191_090 Hb_001191_090 Hb_148200_010--Hb_001191_090 Hb_003376_030 Hb_003376_030 Hb_148200_010--Hb_003376_030 Hb_003053_030 Hb_003053_030 Hb_148200_010--Hb_003053_030 Hb_004156_040 Hb_004156_040 Hb_148200_010--Hb_004156_040 Hb_001279_360 Hb_001279_360 Hb_148200_010--Hb_001279_360 Hb_000086_070 Hb_000086_070 Hb_003927_130--Hb_000086_070 Hb_001829_060 Hb_001829_060 Hb_003927_130--Hb_001829_060 Hb_001109_020 Hb_001109_020 Hb_003927_130--Hb_001109_020 Hb_000883_050 Hb_000883_050 Hb_003927_130--Hb_000883_050 Hb_001722_100 Hb_001722_100 Hb_007479_020--Hb_001722_100 Hb_000671_090 Hb_000671_090 Hb_007479_020--Hb_000671_090 Hb_007479_020--Hb_000120_750 Hb_008173_090 Hb_008173_090 Hb_007479_020--Hb_008173_090 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148930_010--Hb_148200_010 Hb_003398_120 Hb_003398_120 Hb_148930_010--Hb_003398_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.357 42.6205 58.5924 100.258 135.559 212.066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
349.221 453.484 245.197 130.899 54.7518

CAGE analysis