Hb_003398_120

Information

Type -
Description -
Location Contig3398: 192267-203054
Sequence    

Annotation

kegg
ID rcu:RCOM_0000940
description Elicitor-responsive protein, putative
nr
ID XP_012080915.1
description PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
swissprot
ID Q0JHU5
description Elicitor-responsive protein 1 OS=Oryza sativa subsp. japonica GN=ERG1 PE=2 SV=1
trembl
ID B9T4I2
description Elicitor-responsive protein, putative OS=Ricinus communis GN=RCOM_0000940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35463: 193077-203064
cDNA
(Sanger)
(ID:Location)		 039_C17.ab1: 193542-203059

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_120 0.0 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
2 Hb_002925_030 0.0563288622 - - 40S ribosomal protein S16B [Hevea brasiliensis]
3 Hb_001248_080 0.0675412585 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
4 Hb_000227_230 0.068658753 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
5 Hb_001998_050 0.0727095869 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
6 Hb_148930_010 0.0733284207 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
7 Hb_011311_010 0.0780194708 - - 60S ribosomal protein L27C [Hevea brasiliensis]
8 Hb_001638_020 0.0810728101 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_002217_450 0.0817229619 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
10 Hb_000264_090 0.0827828462 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
11 Hb_001863_090 0.0828267347 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
12 Hb_089839_020 0.0837156834 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
13 Hb_032260_030 0.0841597776 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
14 Hb_001143_080 0.0859013102 - - PREDICTED: F-box protein 7 [Jatropha curcas]
15 Hb_001016_090 0.0869639473 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
16 Hb_002660_030 0.0905883859 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000363_480 0.0916600091 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Fragaria vesca subsp. vesca]
18 Hb_002375_090 0.09201386 - - -
19 Hb_002713_070 0.0922520941 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
20 Hb_001433_050 0.0927145347 - - 60S ribosomal protein L18, putative [Ricinus communis]

Gene co-expression network

sample Hb_003398_120 Hb_003398_120 Hb_002925_030 Hb_002925_030 Hb_003398_120--Hb_002925_030 Hb_001248_080 Hb_001248_080 Hb_003398_120--Hb_001248_080 Hb_000227_230 Hb_000227_230 Hb_003398_120--Hb_000227_230 Hb_001998_050 Hb_001998_050 Hb_003398_120--Hb_001998_050 Hb_148930_010 Hb_148930_010 Hb_003398_120--Hb_148930_010 Hb_011311_010 Hb_011311_010 Hb_003398_120--Hb_011311_010 Hb_002925_030--Hb_001998_050 Hb_002925_030--Hb_000227_230 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_002713_070 Hb_002713_070 Hb_002925_030--Hb_002713_070 Hb_002925_030--Hb_011311_010 Hb_155764_020 Hb_155764_020 Hb_001248_080--Hb_155764_020 Hb_001248_080--Hb_148930_010 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001248_080--Hb_001998_050 Hb_000563_240 Hb_000563_240 Hb_001248_080--Hb_000563_240 Hb_000227_230--Hb_001998_050 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_000574_480 Hb_000574_480 Hb_001998_050--Hb_000574_480 Hb_012753_160 Hb_012753_160 Hb_001998_050--Hb_012753_160 Hb_004586_320 Hb_004586_320 Hb_001998_050--Hb_004586_320 Hb_012675_060 Hb_012675_060 Hb_001998_050--Hb_012675_060 Hb_002835_320 Hb_002835_320 Hb_148930_010--Hb_002835_320 Hb_001433_050 Hb_001433_050 Hb_148930_010--Hb_001433_050 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148200_010 Hb_148200_010 Hb_148930_010--Hb_148200_010 Hb_002660_030 Hb_002660_030 Hb_011311_010--Hb_002660_030 Hb_002588_010 Hb_002588_010 Hb_011311_010--Hb_002588_010 Hb_026398_010 Hb_026398_010 Hb_011311_010--Hb_026398_010 Hb_007944_040 Hb_007944_040 Hb_011311_010--Hb_007944_040 Hb_011311_010--Hb_004724_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39874 2.75324 1.66243 3.29741 5.11787 7.58908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4752 22.1846 10.4973 6.13131 1.37781

CAGE analysis