Hb_000380_190

Information

Type -
Description -
Location Contig380: 193324-198749
Sequence    

Annotation

kegg
ID tcc:TCM_042083
description 3'-5'-exoribonuclease family protein isoform 1
nr
ID XP_012064793.1
description PREDICTED: exosome complex component MTR3 [Jatropha curcas]
swissprot
ID Q6P0I8
description Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
trembl
ID A0A067L6C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05498 PE=4 SV=1
Gene Ontology
ID GO:0005634
description exosome complex component mtr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38573: 189717-192371 , PASA_asmbl_38574: 193411-198748
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_190 0.0 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
2 Hb_002311_350 0.0511772009 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
3 Hb_001477_110 0.0539713244 - - prohibitin, putative [Ricinus communis]
4 Hb_000007_100 0.0559448306 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
5 Hb_000227_230 0.07261918 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
6 Hb_000085_320 0.0750038908 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
7 Hb_023732_070 0.0754679302 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
8 Hb_000926_250 0.0768432138 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
9 Hb_001824_070 0.0793330737 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
10 Hb_005618_140 0.0801214351 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
11 Hb_033834_040 0.0811992304 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000580_080 0.0818712117 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
13 Hb_001235_210 0.082104221 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_001818_020 0.0822843672 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
15 Hb_003050_080 0.0822947867 - - 40S ribosomal protein S14, putative [Ricinus communis]
16 Hb_002226_070 0.0837538806 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
17 Hb_001383_060 0.0841188036 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_000189_270 0.0848292554 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
19 Hb_004645_050 0.086218246 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
20 Hb_009793_010 0.0868403936 - - hypothetical protein JCGZ_17222 [Jatropha curcas]

Gene co-expression network

sample Hb_000380_190 Hb_000380_190 Hb_002311_350 Hb_002311_350 Hb_000380_190--Hb_002311_350 Hb_001477_110 Hb_001477_110 Hb_000380_190--Hb_001477_110 Hb_000007_100 Hb_000007_100 Hb_000380_190--Hb_000007_100 Hb_000227_230 Hb_000227_230 Hb_000380_190--Hb_000227_230 Hb_000085_320 Hb_000085_320 Hb_000380_190--Hb_000085_320 Hb_023732_070 Hb_023732_070 Hb_000380_190--Hb_023732_070 Hb_002311_350--Hb_001477_110 Hb_004645_050 Hb_004645_050 Hb_002311_350--Hb_004645_050 Hb_000189_270 Hb_000189_270 Hb_002311_350--Hb_000189_270 Hb_005618_140 Hb_005618_140 Hb_002311_350--Hb_005618_140 Hb_001824_070 Hb_001824_070 Hb_002311_350--Hb_001824_070 Hb_001477_110--Hb_001824_070 Hb_001235_210 Hb_001235_210 Hb_001477_110--Hb_001235_210 Hb_000832_140 Hb_000832_140 Hb_001477_110--Hb_000832_140 Hb_001477_110--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_000007_100--Hb_000926_300 Hb_000926_250 Hb_000926_250 Hb_000007_100--Hb_000926_250 Hb_002284_240 Hb_002284_240 Hb_000007_100--Hb_002284_240 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_003599_040 Hb_003599_040 Hb_000007_100--Hb_003599_040 Hb_001998_050 Hb_001998_050 Hb_000227_230--Hb_001998_050 Hb_002925_030 Hb_002925_030 Hb_000227_230--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_002874_190 Hb_002874_190 Hb_000085_320--Hb_002874_190 Hb_000085_320--Hb_000007_100 Hb_004032_100 Hb_004032_100 Hb_000085_320--Hb_004032_100 Hb_001008_060 Hb_001008_060 Hb_000085_320--Hb_001008_060 Hb_001383_060 Hb_001383_060 Hb_000085_320--Hb_001383_060 Hb_000465_060 Hb_000465_060 Hb_023732_070--Hb_000465_060 Hb_000970_010 Hb_000970_010 Hb_023732_070--Hb_000970_010 Hb_023732_070--Hb_001824_070 Hb_000444_050 Hb_000444_050 Hb_023732_070--Hb_000444_050 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_001584_070 Hb_001584_070 Hb_023732_070--Hb_001584_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4222 8.78497 6.38213 11.1567 20.6954 28.2976
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.3541 45.9132 21.5609 12.2703 5.04768

CAGE analysis