Hb_002284_240

Information

Type -
Description -
Location Contig2284: 164462-166393
Sequence    

Annotation

kegg
ID pop:POPTR_0005s27440g
description POPTRDRAFT_559965; hypothetical protein
nr
ID XP_012073632.1
description PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KY73
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08065 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23822: 164459-166380 , PASA_asmbl_23823: 165264-165526
cDNA
(Sanger)
(ID:Location)		 003_L21.ab1: 164475-166174 , 043_M06.ab1: 164469-166163

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002284_240 0.0 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
2 Hb_003599_040 0.0449828297 - - unnamed protein product [Vitis vinifera]
3 Hb_159809_020 0.050842987 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000926_250 0.0619224124 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
5 Hb_000007_100 0.0625997004 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
6 Hb_000020_060 0.0648461908 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
7 Hb_000327_190 0.0655681641 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
8 Hb_000926_300 0.0657437503 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
9 Hb_002226_070 0.0688712448 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
10 Hb_000205_160 0.0726997432 - - Peroxisome biogenesis protein 12 [Morus notabilis]
11 Hb_008900_010 0.0732929315 - - PREDICTED: uncharacterized protein LOC105773666 [Gossypium raimondii]
12 Hb_015807_040 0.0737894103 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
13 Hb_000331_450 0.0743026014 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
14 Hb_004032_010 0.0752867891 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
15 Hb_033834_040 0.0757834585 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000059_370 0.07661474 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
17 Hb_001140_370 0.0772059421 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
18 Hb_000307_090 0.0788521917 - - hypothetical protein CICLE_v10002475mg [Citrus clementina]
19 Hb_000103_090 0.079191091 - - PREDICTED: protein RDM1 [Jatropha curcas]
20 Hb_024071_020 0.0793235861 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]

Gene co-expression network

sample Hb_002284_240 Hb_002284_240 Hb_003599_040 Hb_003599_040 Hb_002284_240--Hb_003599_040 Hb_159809_020 Hb_159809_020 Hb_002284_240--Hb_159809_020 Hb_000926_250 Hb_000926_250 Hb_002284_240--Hb_000926_250 Hb_000007_100 Hb_000007_100 Hb_002284_240--Hb_000007_100 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_000327_190 Hb_000327_190 Hb_002284_240--Hb_000327_190 Hb_003599_040--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_003599_040--Hb_000926_300 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_003599_040--Hb_000327_190 Hb_003599_040--Hb_000007_100 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_159809_020--Hb_000926_250 Hb_000926_250--Hb_000007_100 Hb_033834_040 Hb_033834_040 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050 Hb_000007_100--Hb_000926_300 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_002995_020 Hb_002995_020 Hb_000020_060--Hb_002995_020 Hb_004116_190 Hb_004116_190 Hb_000020_060--Hb_004116_190 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_003787_010 Hb_003787_010 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_000327_190--Hb_000926_250 Hb_002477_070 Hb_002477_070 Hb_000327_190--Hb_002477_070 Hb_000327_190--Hb_033834_040 Hb_008900_010 Hb_008900_010 Hb_000327_190--Hb_008900_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2913 13.3129 14.8428 18.7546 29.3514 32.3116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.6841 49.858 25.4506 21.6006 11.1187

CAGE analysis