Hb_033834_040

Information

Type -
Description -
Location Contig33834: 38255-41519
Sequence    

Annotation

kegg
ID rcu:RCOM_0714600
description hypothetical protein
nr
ID XP_002529718.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUP9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0714600 PE=4 SV=1
Gene Ontology
ID GO:0005739
description transmembrane protein 70 mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35390: 38350-41456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033834_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002226_070 0.0512267785 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
3 Hb_000103_090 0.0567727868 - - PREDICTED: protein RDM1 [Jatropha curcas]
4 Hb_000926_250 0.0572437472 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
5 Hb_004032_010 0.0657319242 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
6 Hb_002183_090 0.0659576763 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
7 Hb_159809_020 0.0665004873 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_027073_040 0.0676017078 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
9 Hb_000007_100 0.0706526556 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
10 Hb_002890_140 0.071263452 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
11 Hb_003996_020 0.0721863308 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000174_090 0.0737146093 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
13 Hb_000270_370 0.0741652488 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
14 Hb_001226_160 0.0744481292 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
15 Hb_001828_190 0.0749998776 - - PREDICTED: phosducin-like protein 3 [Prunus mume]
16 Hb_002759_060 0.075455323 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
17 Hb_010504_020 0.0756214043 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_002284_240 0.0757834585 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
19 Hb_000613_140 0.0759876844 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
20 Hb_002214_040 0.075995475 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]

Gene co-expression network

sample Hb_033834_040 Hb_033834_040 Hb_002226_070 Hb_002226_070 Hb_033834_040--Hb_002226_070 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_000926_250 Hb_000926_250 Hb_033834_040--Hb_000926_250 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_002226_070--Hb_004032_010 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_002226_070--Hb_000926_250 Hb_000056_200 Hb_000056_200 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_002890_140 Hb_002890_140 Hb_000103_090--Hb_002890_140 Hb_032717_080 Hb_032717_080 Hb_000103_090--Hb_032717_080 Hb_004128_190 Hb_004128_190 Hb_000103_090--Hb_004128_190 Hb_002477_330 Hb_002477_330 Hb_000103_090--Hb_002477_330 Hb_000529_190 Hb_000529_190 Hb_000103_090--Hb_000529_190 Hb_000007_100 Hb_000007_100 Hb_000926_250--Hb_000007_100 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002284_240 Hb_002284_240 Hb_000926_250--Hb_002284_240 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050 Hb_000656_170 Hb_000656_170 Hb_004032_010--Hb_000656_170 Hb_000690_180 Hb_000690_180 Hb_004032_010--Hb_000690_180 Hb_005045_060 Hb_005045_060 Hb_004032_010--Hb_005045_060 Hb_003108_020 Hb_003108_020 Hb_004032_010--Hb_003108_020 Hb_000085_050 Hb_000085_050 Hb_002183_090--Hb_000085_050 Hb_000976_170 Hb_000976_170 Hb_002183_090--Hb_000976_170 Hb_000384_100 Hb_000384_100 Hb_002183_090--Hb_000384_100 Hb_002044_080 Hb_002044_080 Hb_002183_090--Hb_002044_080 Hb_000251_130 Hb_000251_130 Hb_002183_090--Hb_000251_130 Hb_002963_010 Hb_002963_010 Hb_159809_020--Hb_002963_010 Hb_003599_040 Hb_003599_040 Hb_159809_020--Hb_003599_040 Hb_159809_020--Hb_002284_240 Hb_000020_060 Hb_000020_060 Hb_159809_020--Hb_000020_060 Hb_010504_020 Hb_010504_020 Hb_159809_020--Hb_010504_020 Hb_159809_020--Hb_000926_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3138 15.0266 14.299 24.1675 32.6541 48.2133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.0107 67.2349 40.3421 31.7685 16.6008

CAGE analysis