Hb_000059_370

Information

Type -
Description -
Location Contig59: 326047-329823
Sequence    

Annotation

kegg
ID rcu:RCOM_1502620
description hypothetical protein
nr
ID XP_012090524.1
description PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
swissprot
ID Q6DEF6
description U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2 SV=1
trembl
ID A0A067JR57
description U6 snRNA phosphodiesterase OS=Jatropha curcas GN=JCGZ_26321 PE=3 SV=1
Gene Ontology
ID GO:0005634
description u6 snrna phosphodiesterase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50189: 328141-329724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000059_370 0.0 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
2 Hb_001105_030 0.0446088259 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
3 Hb_000479_090 0.0559569348 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
4 Hb_002226_070 0.0627294779 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
5 Hb_000384_100 0.0627553718 - - hydrolase, putative [Ricinus communis]
6 Hb_002534_150 0.0649593367 - - catalytic, putative [Ricinus communis]
7 Hb_001821_010 0.0655688158 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
8 Hb_001828_060 0.0661293671 desease resistance Gene Name: AAA_31 nucleotide-binding protein, putative [Ricinus communis]
9 Hb_004116_190 0.0671273869 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
10 Hb_001633_050 0.0679715776 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
11 Hb_159809_020 0.067999397 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_002686_020 0.0684391323 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
13 Hb_002056_050 0.068660943 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
14 Hb_000020_060 0.0687687382 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
15 Hb_000920_110 0.0692636079 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
16 Hb_008648_010 0.0697101748 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
17 Hb_002477_070 0.0710779692 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
18 Hb_000656_240 0.0717980799 - - proteasome subunit alpha type, putative [Ricinus communis]
19 Hb_000676_180 0.0722564268 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
20 Hb_000373_120 0.0739732932 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]

Gene co-expression network

sample Hb_000059_370 Hb_000059_370 Hb_001105_030 Hb_001105_030 Hb_000059_370--Hb_001105_030 Hb_000479_090 Hb_000479_090 Hb_000059_370--Hb_000479_090 Hb_002226_070 Hb_002226_070 Hb_000059_370--Hb_002226_070 Hb_000384_100 Hb_000384_100 Hb_000059_370--Hb_000384_100 Hb_002534_150 Hb_002534_150 Hb_000059_370--Hb_002534_150 Hb_001821_010 Hb_001821_010 Hb_000059_370--Hb_001821_010 Hb_001105_030--Hb_001821_010 Hb_012725_050 Hb_012725_050 Hb_001105_030--Hb_012725_050 Hb_001157_020 Hb_001157_020 Hb_001105_030--Hb_001157_020 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_000815_320 Hb_000815_320 Hb_001105_030--Hb_000815_320 Hb_000479_090--Hb_000384_100 Hb_000920_110 Hb_000920_110 Hb_000479_090--Hb_000920_110 Hb_004127_020 Hb_004127_020 Hb_000479_090--Hb_004127_020 Hb_000676_180 Hb_000676_180 Hb_000479_090--Hb_000676_180 Hb_002686_020 Hb_002686_020 Hb_000479_090--Hb_002686_020 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_000056_200 Hb_000056_200 Hb_002226_070--Hb_000056_200 Hb_010068_020 Hb_010068_020 Hb_000384_100--Hb_010068_020 Hb_002183_090 Hb_002183_090 Hb_000384_100--Hb_002183_090 Hb_000230_510 Hb_000230_510 Hb_000384_100--Hb_000230_510 Hb_000384_100--Hb_000920_110 Hb_001828_060 Hb_001828_060 Hb_002534_150--Hb_001828_060 Hb_005725_250 Hb_005725_250 Hb_002534_150--Hb_005725_250 Hb_001534_120 Hb_001534_120 Hb_002534_150--Hb_001534_120 Hb_005697_060 Hb_005697_060 Hb_002534_150--Hb_005697_060 Hb_004116_190 Hb_004116_190 Hb_002534_150--Hb_004116_190 Hb_001821_010--Hb_000815_320 Hb_001821_010--Hb_000056_200 Hb_001821_010--Hb_012725_050 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63154 3.38419 4.65104 4.97735 7.28615 6.94468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.85492 13.984 8.06688 5.40337 5.20758

CAGE analysis