Hb_005697_060

Information

Type transcription factor
Description TF Family: HB
Location Contig5697: 70010-77378
Sequence    

Annotation

kegg
ID rcu:RCOM_0594590
description hypothetical protein
nr
ID XP_012068466.1
description PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
swissprot
ID P48785
description Pathogenesis-related homeodomain protein OS=Arabidopsis thaliana GN=PRH PE=2 SV=1
trembl
ID B9SP84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0594590 PE=4 SV=1
Gene Ontology
ID GO:0003677
description pathogenesis-related homeodomain protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49278: 71153-74229 , PASA_asmbl_49279: 75613-77304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005697_060 0.0 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
2 Hb_007163_070 0.0451247959 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
3 Hb_006120_070 0.0612436341 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
4 Hb_028227_020 0.0633515543 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]
5 Hb_000465_090 0.0676887324 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
6 Hb_001662_150 0.0676898846 - - Scaffold attachment factor B1 [Medicago truncatula]
7 Hb_001534_120 0.0679002255 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
8 Hb_002534_150 0.0684305249 - - catalytic, putative [Ricinus communis]
9 Hb_003125_120 0.0695680676 - - PREDICTED: TITAN-like protein [Jatropha curcas]
10 Hb_007632_030 0.0718911016 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
11 Hb_000120_790 0.0727488027 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
12 Hb_001512_060 0.0731698374 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
13 Hb_009421_020 0.0735783129 - - PREDICTED: caltractin-like [Jatropha curcas]
14 Hb_009694_010 0.0740750946 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000365_120 0.0763468359 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
16 Hb_008554_060 0.0773159431 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
17 Hb_000317_240 0.0774638471 - - PREDICTED: protein DYAD [Jatropha curcas]
18 Hb_001635_180 0.0778608872 - - PREDICTED: F-box/FBD/LRR-repeat protein At5g53840-like [Jatropha curcas]
19 Hb_002530_030 0.0778966316 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
20 Hb_004116_060 0.0781997061 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]

Gene co-expression network

sample Hb_005697_060 Hb_005697_060 Hb_007163_070 Hb_007163_070 Hb_005697_060--Hb_007163_070 Hb_006120_070 Hb_006120_070 Hb_005697_060--Hb_006120_070 Hb_028227_020 Hb_028227_020 Hb_005697_060--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_005697_060--Hb_000465_090 Hb_001662_150 Hb_001662_150 Hb_005697_060--Hb_001662_150 Hb_001534_120 Hb_001534_120 Hb_005697_060--Hb_001534_120 Hb_007163_070--Hb_001662_150 Hb_007163_070--Hb_000465_090 Hb_007163_070--Hb_028227_020 Hb_003942_020 Hb_003942_020 Hb_007163_070--Hb_003942_020 Hb_002534_150 Hb_002534_150 Hb_007163_070--Hb_002534_150 Hb_002918_030 Hb_002918_030 Hb_006120_070--Hb_002918_030 Hb_024847_010 Hb_024847_010 Hb_006120_070--Hb_024847_010 Hb_001512_060 Hb_001512_060 Hb_006120_070--Hb_001512_060 Hb_000959_210 Hb_000959_210 Hb_006120_070--Hb_000959_210 Hb_001329_290 Hb_001329_290 Hb_006120_070--Hb_001329_290 Hb_001157_020 Hb_001157_020 Hb_028227_020--Hb_001157_020 Hb_009694_010 Hb_009694_010 Hb_028227_020--Hb_009694_010 Hb_012725_050 Hb_012725_050 Hb_028227_020--Hb_012725_050 Hb_001936_080 Hb_001936_080 Hb_028227_020--Hb_001936_080 Hb_000120_790 Hb_000120_790 Hb_028227_020--Hb_000120_790 Hb_001012_010 Hb_001012_010 Hb_000465_090--Hb_001012_010 Hb_000465_090--Hb_009694_010 Hb_002477_300 Hb_002477_300 Hb_000465_090--Hb_002477_300 Hb_146673_010 Hb_146673_010 Hb_000465_090--Hb_146673_010 Hb_003226_140 Hb_003226_140 Hb_001662_150--Hb_003226_140 Hb_000329_200 Hb_000329_200 Hb_001662_150--Hb_000329_200 Hb_001662_150--Hb_001157_020 Hb_005306_170 Hb_005306_170 Hb_001662_150--Hb_005306_170 Hb_001195_480 Hb_001195_480 Hb_001534_120--Hb_001195_480 Hb_007477_070 Hb_007477_070 Hb_001534_120--Hb_007477_070 Hb_010921_010 Hb_010921_010 Hb_001534_120--Hb_010921_010 Hb_001534_120--Hb_002534_150 Hb_001534_120--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_001534_120--Hb_000362_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.05304 2.32047 4.24767 2.93258 5.19063 4.61867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.05679 7.24209 3.66969 3.84382 3.78163

CAGE analysis