Hb_003942_020

Information

Type -
Description -
Location Contig3942: 14024-17190
Sequence    

Annotation

kegg
ID rcu:RCOM_0061100
description RNA binding protein, putative
nr
ID XP_012081253.1
description PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
swissprot
ID Q9LIS2
description Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1
trembl
ID B9T5A2
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_0061100 PE=4 SV=1
Gene Ontology
ID GO:0005634
description rna-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39469: 15879-16165 , PASA_asmbl_39470: 14267-17126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003942_020 0.0 - - PREDICTED: multiple RNA-binding domain-containing protein 1 isoform X1 [Jatropha curcas]
2 Hb_007163_070 0.0738930432 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
3 Hb_008554_060 0.0784264582 - - PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Jatropha curcas]
4 Hb_011512_070 0.0806330421 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
5 Hb_189216_020 0.0829016306 - - PREDICTED: translin [Jatropha curcas]
6 Hb_000529_030 0.083895131 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_146673_010 0.0844027456 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
8 Hb_000465_390 0.0870156558 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Jatropha curcas]
9 Hb_111036_010 0.0905630604 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
10 Hb_002226_060 0.0920455521 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
11 Hb_000185_050 0.0921246785 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
12 Hb_005697_060 0.0922564162 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
13 Hb_000731_160 0.0928646074 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
14 Hb_003064_020 0.094898902 - - hypothetical protein JCGZ_21649 [Jatropha curcas]
15 Hb_000656_240 0.0949382803 - - proteasome subunit alpha type, putative [Ricinus communis]
16 Hb_000465_090 0.0949961018 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
17 Hb_003678_020 0.0972266681 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001472_100 0.0972640636 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
19 Hb_001662_150 0.0975293095 - - Scaffold attachment factor B1 [Medicago truncatula]
20 Hb_004453_130 0.0985024125 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003942_020 Hb_003942_020 Hb_007163_070 Hb_007163_070 Hb_003942_020--Hb_007163_070 Hb_008554_060 Hb_008554_060 Hb_003942_020--Hb_008554_060 Hb_011512_070 Hb_011512_070 Hb_003942_020--Hb_011512_070 Hb_189216_020 Hb_189216_020 Hb_003942_020--Hb_189216_020 Hb_000529_030 Hb_000529_030 Hb_003942_020--Hb_000529_030 Hb_146673_010 Hb_146673_010 Hb_003942_020--Hb_146673_010 Hb_005697_060 Hb_005697_060 Hb_007163_070--Hb_005697_060 Hb_001662_150 Hb_001662_150 Hb_007163_070--Hb_001662_150 Hb_000465_090 Hb_000465_090 Hb_007163_070--Hb_000465_090 Hb_028227_020 Hb_028227_020 Hb_007163_070--Hb_028227_020 Hb_002534_150 Hb_002534_150 Hb_007163_070--Hb_002534_150 Hb_000589_120 Hb_000589_120 Hb_008554_060--Hb_000589_120 Hb_003064_020 Hb_003064_020 Hb_008554_060--Hb_003064_020 Hb_000656_240 Hb_000656_240 Hb_008554_060--Hb_000656_240 Hb_002078_140 Hb_002078_140 Hb_008554_060--Hb_002078_140 Hb_000667_070 Hb_000667_070 Hb_008554_060--Hb_000667_070 Hb_001534_120 Hb_001534_120 Hb_008554_060--Hb_001534_120 Hb_011512_070--Hb_000656_240 Hb_002226_060 Hb_002226_060 Hb_011512_070--Hb_002226_060 Hb_011512_070--Hb_000529_030 Hb_010098_050 Hb_010098_050 Hb_011512_070--Hb_010098_050 Hb_007304_090 Hb_007304_090 Hb_011512_070--Hb_007304_090 Hb_000205_090 Hb_000205_090 Hb_011512_070--Hb_000205_090 Hb_000948_160 Hb_000948_160 Hb_189216_020--Hb_000948_160 Hb_002553_060 Hb_002553_060 Hb_189216_020--Hb_002553_060 Hb_001470_030 Hb_001470_030 Hb_189216_020--Hb_001470_030 Hb_003938_090 Hb_003938_090 Hb_189216_020--Hb_003938_090 Hb_002994_030 Hb_002994_030 Hb_189216_020--Hb_002994_030 Hb_001946_400 Hb_001946_400 Hb_189216_020--Hb_001946_400 Hb_000236_390 Hb_000236_390 Hb_000529_030--Hb_000236_390 Hb_001195_480 Hb_001195_480 Hb_000529_030--Hb_001195_480 Hb_150651_040 Hb_150651_040 Hb_000529_030--Hb_150651_040 Hb_000529_030--Hb_002226_060 Hb_000529_030--Hb_000656_240 Hb_000633_020 Hb_000633_020 Hb_146673_010--Hb_000633_020 Hb_002477_300 Hb_002477_300 Hb_146673_010--Hb_002477_300 Hb_146673_010--Hb_000465_090 Hb_002946_190 Hb_002946_190 Hb_146673_010--Hb_002946_190 Hb_003077_020 Hb_003077_020 Hb_146673_010--Hb_003077_020 Hb_000731_160 Hb_000731_160 Hb_146673_010--Hb_000731_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3148 7.50742 16.6174 8.13082 11.1474 12.2052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5066 26.6383 7.66251 12.648 13.7277

CAGE analysis