Hb_007477_070

Information

Type -
Description -
Location Contig7477: 60769-64638
Sequence    

Annotation

kegg
ID rcu:RCOM_1723420
description hypothetical protein
nr
ID KDP26435.1
description hypothetical protein JCGZ_17593 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17593 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56715: 63405-63711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007477_070 0.0 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
2 Hb_001534_120 0.0548770487 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
3 Hb_025645_010 0.0674096362 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
4 Hb_001512_060 0.0675907571 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
5 Hb_001662_070 0.0724823375 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
6 Hb_000771_120 0.0727420133 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
7 Hb_007576_040 0.0752268656 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
8 Hb_000362_200 0.0764782466 - - exonuclease family protein [Populus trichocarpa]
9 Hb_010921_010 0.0781712559 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
10 Hb_001195_480 0.0792526701 - - cop9 complex subunit, putative [Ricinus communis]
11 Hb_001404_100 0.0795784229 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
12 Hb_002043_190 0.0800537885 - - rwd domain-containing protein, putative [Ricinus communis]
13 Hb_000815_320 0.0816963178 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
14 Hb_002233_150 0.0822582746 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
15 Hb_008686_080 0.0827671286 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
16 Hb_001012_010 0.0843606315 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
17 Hb_001305_010 0.0845986143 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Jatropha curcas]
18 Hb_003363_110 0.0846609951 - - protein with unknown function [Ricinus communis]
19 Hb_001489_060 0.0854877234 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
20 Hb_000580_090 0.0871111891 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007477_070 Hb_007477_070 Hb_001534_120 Hb_001534_120 Hb_007477_070--Hb_001534_120 Hb_025645_010 Hb_025645_010 Hb_007477_070--Hb_025645_010 Hb_001512_060 Hb_001512_060 Hb_007477_070--Hb_001512_060 Hb_001662_070 Hb_001662_070 Hb_007477_070--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_007477_070--Hb_000771_120 Hb_007576_040 Hb_007576_040 Hb_007477_070--Hb_007576_040 Hb_001195_480 Hb_001195_480 Hb_001534_120--Hb_001195_480 Hb_010921_010 Hb_010921_010 Hb_001534_120--Hb_010921_010 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_001534_120--Hb_001512_060 Hb_000362_200 Hb_000362_200 Hb_001534_120--Hb_000362_200 Hb_025645_010--Hb_001662_070 Hb_025645_010--Hb_000771_120 Hb_000787_050 Hb_000787_050 Hb_025645_010--Hb_000787_050 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_001579_030 Hb_001579_030 Hb_025645_010--Hb_001579_030 Hb_001512_060--Hb_010921_010 Hb_001512_060--Hb_000362_200 Hb_007154_020 Hb_007154_020 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_001662_070--Hb_000787_050 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_000302_270 Hb_000302_270 Hb_000771_120--Hb_000302_270 Hb_003747_200 Hb_003747_200 Hb_000771_120--Hb_003747_200 Hb_001404_100 Hb_001404_100 Hb_000771_120--Hb_001404_100 Hb_028995_040 Hb_028995_040 Hb_000771_120--Hb_028995_040 Hb_010661_030 Hb_010661_030 Hb_007576_040--Hb_010661_030 Hb_007951_060 Hb_007951_060 Hb_007576_040--Hb_007951_060 Hb_005503_030 Hb_005503_030 Hb_007576_040--Hb_005503_030 Hb_063716_050 Hb_063716_050 Hb_007576_040--Hb_063716_050 Hb_000327_120 Hb_000327_120 Hb_007576_040--Hb_000327_120 Hb_007576_040--Hb_001512_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16134 0.417557 1.10682 0.595679 1.15197 0.933671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.22532 1.48629 0.949161 0.727972 0.338397

CAGE analysis