Hb_007154_020

Information

Type -
Description -
Location Contig7154: 2665-3728
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007154_020 0.0 - - -
2 Hb_011381_060 0.0637533702 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
3 Hb_010661_030 0.0663054499 - - hypothetical protein PHAVU_009G146200g [Phaseolus vulgaris]
4 Hb_001512_060 0.0684492598 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
5 Hb_005186_050 0.068838714 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
6 Hb_001348_070 0.0692127385 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_010921_010 0.0705715201 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
8 Hb_000251_070 0.0746281544 - - hypothetical protein L484_010641 [Morus notabilis]
9 Hb_001934_030 0.0759771994 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
10 Hb_002232_440 0.0763546143 - - PREDICTED: uncharacterized protein LOC105130257 [Populus euphratica]
11 Hb_003607_150 0.0764069734 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
12 Hb_003363_110 0.0767265484 - - protein with unknown function [Ricinus communis]
13 Hb_001404_100 0.0790730684 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
14 Hb_003069_010 0.079340535 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
15 Hb_002233_150 0.0801939114 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
16 Hb_000392_440 0.0811614273 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
17 Hb_007576_040 0.0812371131 - - PREDICTED: uncharacterized protein LOC105169221 [Sesamum indicum]
18 Hb_011360_140 0.0813437403 - - 40S ribosomal protein S19, putative [Ricinus communis]
19 Hb_001564_130 0.0814002783 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
20 Hb_002928_130 0.0828791722 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]

Gene co-expression network

sample Hb_007154_020 Hb_007154_020 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_001512_060 Hb_001512_060 Hb_007154_020--Hb_001512_060 Hb_005186_050 Hb_005186_050 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_010921_010 Hb_010921_010 Hb_007154_020--Hb_010921_010 Hb_145880_030 Hb_145880_030 Hb_011381_060--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_011381_060--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_011381_060--Hb_002374_170 Hb_002045_040 Hb_002045_040 Hb_011381_060--Hb_002045_040 Hb_028841_030 Hb_028841_030 Hb_011381_060--Hb_028841_030 Hb_001635_170 Hb_001635_170 Hb_010661_030--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_010661_030--Hb_007576_040 Hb_001404_100 Hb_001404_100 Hb_010661_030--Hb_001404_100 Hb_002233_150 Hb_002233_150 Hb_010661_030--Hb_002233_150 Hb_003069_010 Hb_003069_010 Hb_010661_030--Hb_003069_010 Hb_001512_060--Hb_010921_010 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001534_120 Hb_001534_120 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_005186_050--Hb_003069_010 Hb_003607_150 Hb_003607_150 Hb_005186_050--Hb_003607_150 Hb_005186_050--Hb_000362_200 Hb_005186_050--Hb_001512_060 Hb_000251_070 Hb_000251_070 Hb_005186_050--Hb_000251_070 Hb_002687_140 Hb_002687_140 Hb_001348_070--Hb_002687_140 Hb_003752_080 Hb_003752_080 Hb_001348_070--Hb_003752_080 Hb_001564_130 Hb_001564_130 Hb_001348_070--Hb_001564_130 Hb_000670_020 Hb_000670_020 Hb_001348_070--Hb_000670_020 Hb_001348_070--Hb_002233_150 Hb_010921_010--Hb_001534_120 Hb_005993_040 Hb_005993_040 Hb_010921_010--Hb_005993_040 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.53907 3.07264 5.80728 2.10227 7.70699 5.57417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.92561 11.0841 5.04863 2.7983 2.144

CAGE analysis