Hb_002374_170

Information

Type -
Description -
Location Contig2374: 125375-132848
Sequence    

Annotation

kegg
ID egr:104450924
description proteasome subunit beta type-3-A
nr
ID ADR70867.1
description 20S proteasome beta subunit C1 [Hevea brasiliensis]
swissprot
ID O81153
description Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1
trembl
ID A0A0D3CC68
description Uncharacterized protein OS=Brassica oleracea var. oleracea GN=OGG1 PE=4 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit beta type-3-a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24859: 125568-129657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_170 0.0 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]
2 Hb_011381_060 0.0755902263 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
3 Hb_001459_080 0.0765747069 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
4 Hb_004787_060 0.0811808833 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
5 Hb_168878_010 0.0815947204 - - 60S ribosomal protein L32A [Hevea brasiliensis]
6 Hb_002811_260 0.0928750769 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
7 Hb_028841_030 0.0949341308 - - -
8 Hb_000694_040 0.0953918715 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_002045_040 0.0957337668 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
10 Hb_003363_110 0.0964276254 - - protein with unknown function [Ricinus communis]
11 Hb_007154_020 0.0968247261 - - -
12 Hb_175215_010 0.0989157867 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
13 Hb_000025_230 0.0989998285 - - PREDICTED: 10 kDa chaperonin [Vitis vinifera]
14 Hb_000286_070 0.1016885572 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
15 Hb_008112_040 0.104854194 - - PREDICTED: uncharacterized protein LOC105637336 [Jatropha curcas]
16 Hb_021419_020 0.1065439454 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
17 Hb_004934_030 0.1073193767 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
18 Hb_003185_110 0.1075917923 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
19 Hb_002820_110 0.1076246065 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
20 Hb_005773_060 0.1096259168 - - defender against cell death, putative [Ricinus communis]

Gene co-expression network

sample Hb_002374_170 Hb_002374_170 Hb_011381_060 Hb_011381_060 Hb_002374_170--Hb_011381_060 Hb_001459_080 Hb_001459_080 Hb_002374_170--Hb_001459_080 Hb_004787_060 Hb_004787_060 Hb_002374_170--Hb_004787_060 Hb_168878_010 Hb_168878_010 Hb_002374_170--Hb_168878_010 Hb_002811_260 Hb_002811_260 Hb_002374_170--Hb_002811_260 Hb_028841_030 Hb_028841_030 Hb_002374_170--Hb_028841_030 Hb_007154_020 Hb_007154_020 Hb_011381_060--Hb_007154_020 Hb_145880_030 Hb_145880_030 Hb_011381_060--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_011381_060--Hb_010407_040 Hb_002045_040 Hb_002045_040 Hb_011381_060--Hb_002045_040 Hb_011381_060--Hb_028841_030 Hb_001459_080--Hb_168878_010 Hb_001459_080--Hb_004787_060 Hb_000025_230 Hb_000025_230 Hb_001459_080--Hb_000025_230 Hb_000260_550 Hb_000260_550 Hb_001459_080--Hb_000260_550 Hb_001459_080--Hb_028841_030 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_001329_290 Hb_001329_290 Hb_004787_060--Hb_001329_290 Hb_000286_070 Hb_000286_070 Hb_004787_060--Hb_000286_070 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_004449_170 Hb_004449_170 Hb_004787_060--Hb_004449_170 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010 Hb_168878_010--Hb_004787_060 Hb_168878_010--Hb_000025_230 Hb_001143_220 Hb_001143_220 Hb_168878_010--Hb_001143_220 Hb_008112_040 Hb_008112_040 Hb_168878_010--Hb_008112_040 Hb_002811_260--Hb_021419_020 Hb_128048_010 Hb_128048_010 Hb_002811_260--Hb_128048_010 Hb_005773_060 Hb_005773_060 Hb_002811_260--Hb_005773_060 Hb_001195_480 Hb_001195_480 Hb_002811_260--Hb_001195_480 Hb_005045_060 Hb_005045_060 Hb_002811_260--Hb_005045_060 Hb_001328_040 Hb_001328_040 Hb_002811_260--Hb_001328_040 Hb_003363_110 Hb_003363_110 Hb_028841_030--Hb_003363_110 Hb_005186_050 Hb_005186_050 Hb_028841_030--Hb_005186_050 Hb_003607_150 Hb_003607_150 Hb_028841_030--Hb_003607_150 Hb_028841_030--Hb_007154_020 Hb_003069_010 Hb_003069_010 Hb_028841_030--Hb_003069_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.1606 11.1804 42.5775 14.1014 37.7088 26.8419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.7613 67.7482 17.325 16.7148 6.06167

CAGE analysis