Hb_005322_040

Information

Type -
Description -
Location Contig5322: 54151-55916
Sequence    

Annotation

kegg
ID rcu:RCOM_1315040
description 60S ribosomal protein L9, putative
nr
ID XP_002518960.1
description 60S ribosomal protein L9, putative [Ricinus communis]
swissprot
ID P49210
description 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9 PE=2 SV=3
trembl
ID B9RYZ1
description 60S ribosomal protein L9, putative OS=Ricinus communis GN=RCOM_1315040 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47421: 54225-55745
cDNA
(Sanger)
(ID:Location)		 009_G24.ab1: 54225-55610 , 019_H23.ab1: 54395-55697 , 052_I20.ab1: 54232-55565

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005322_040 0.0 - - 60S ribosomal protein L9, putative [Ricinus communis]
2 Hb_004787_060 0.059088888 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
3 Hb_000012_220 0.0678259282 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010921_010 0.0731595586 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
5 Hb_013405_090 0.082087405 - - PREDICTED: uncharacterized protein LOC105648433 isoform X1 [Jatropha curcas]
6 Hb_011609_100 0.0822810103 - - PREDICTED: 30S ribosomal protein 3, chloroplastic-like [Jatropha curcas]
7 Hb_001512_060 0.0855351921 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
8 Hb_000127_180 0.0877031244 - - 40S ribosomal protein S18, putative [Ricinus communis]
9 Hb_001504_020 0.0887609973 - - 40S ribosomal protein S12A [Hevea brasiliensis]
10 Hb_001329_290 0.0890186074 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
11 Hb_021419_020 0.0893383531 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
12 Hb_001489_060 0.0901205188 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
13 Hb_001564_130 0.0911775572 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_007154_020 0.0915716134 - - -
15 Hb_003050_080 0.0923335175 - - 40S ribosomal protein S14, putative [Ricinus communis]
16 Hb_001540_010 0.0927354884 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
17 Hb_002066_070 0.0968958677 - - PREDICTED: uncharacterized protein LOC105631043 [Jatropha curcas]
18 Hb_000258_350 0.0975244108 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
19 Hb_002868_010 0.0982366722 - - 60S ribosomal protein L30, putative [Ricinus communis]
20 Hb_003528_060 0.0983556689 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005322_040 Hb_005322_040 Hb_004787_060 Hb_004787_060 Hb_005322_040--Hb_004787_060 Hb_000012_220 Hb_000012_220 Hb_005322_040--Hb_000012_220 Hb_010921_010 Hb_010921_010 Hb_005322_040--Hb_010921_010 Hb_013405_090 Hb_013405_090 Hb_005322_040--Hb_013405_090 Hb_011609_100 Hb_011609_100 Hb_005322_040--Hb_011609_100 Hb_001512_060 Hb_001512_060 Hb_005322_040--Hb_001512_060 Hb_001329_290 Hb_001329_290 Hb_004787_060--Hb_001329_290 Hb_000286_070 Hb_000286_070 Hb_004787_060--Hb_000286_070 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_004449_170 Hb_004449_170 Hb_004787_060--Hb_004449_170 Hb_004787_060--Hb_010921_010 Hb_000127_180 Hb_000127_180 Hb_000012_220--Hb_000127_180 Hb_003528_060 Hb_003528_060 Hb_000012_220--Hb_003528_060 Hb_003050_080 Hb_003050_080 Hb_000012_220--Hb_003050_080 Hb_000487_250 Hb_000487_250 Hb_000012_220--Hb_000487_250 Hb_002868_010 Hb_002868_010 Hb_000012_220--Hb_002868_010 Hb_010921_010--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_010921_010--Hb_001534_120 Hb_005993_040 Hb_005993_040 Hb_010921_010--Hb_005993_040 Hb_007154_020 Hb_007154_020 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090 Hb_013405_090--Hb_003528_060 Hb_001538_120 Hb_001538_120 Hb_013405_090--Hb_001538_120 Hb_013405_090--Hb_000012_220 Hb_010261_060 Hb_010261_060 Hb_013405_090--Hb_010261_060 Hb_129924_010 Hb_129924_010 Hb_013405_090--Hb_129924_010 Hb_003992_240 Hb_003992_240 Hb_011609_100--Hb_003992_240 Hb_003125_200 Hb_003125_200 Hb_011609_100--Hb_003125_200 Hb_047503_010 Hb_047503_010 Hb_011609_100--Hb_047503_010 Hb_000959_210 Hb_000959_210 Hb_011609_100--Hb_000959_210 Hb_002346_020 Hb_002346_020 Hb_011609_100--Hb_002346_020 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_001512_060--Hb_007154_020 Hb_001512_060--Hb_002346_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.9662 45.9418 82.2568 36.0314 114.385 85.7051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.5916 219.931 73.3432 62.7429 31.7853

CAGE analysis