Hb_001329_290

Information

Type -
Description -
Location Contig1329: 233902-237133
Sequence    

Annotation

kegg
ID rcu:RCOM_1343450
description NEFA-interacting nuclear protein NIP30, putative
nr
ID XP_012083001.1
description PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K949
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09453: 233880-237131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_290 0.0 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
2 Hb_004449_170 0.0436292093 - - PREDICTED: uncharacterized protein LOC105631285 isoform X1 [Jatropha curcas]
3 Hb_000286_070 0.0585582128 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
4 Hb_004787_060 0.0624758106 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
5 Hb_001564_130 0.0770993642 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_003292_040 0.081111799 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
7 Hb_000265_240 0.0815708839 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
8 Hb_006120_070 0.082261901 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
9 Hb_003935_020 0.0830310554 - - PREDICTED: protein CURVATURE THYLAKOID 1D, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_001534_120 0.0831448775 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
11 Hb_010921_010 0.0845288017 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
12 Hb_000959_210 0.0850933489 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
13 Hb_005588_030 0.0851668379 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
14 Hb_001512_060 0.0854134637 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
15 Hb_002477_300 0.0876477616 - - transcription factor, putative [Ricinus communis]
16 Hb_004116_060 0.0881591552 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
17 Hb_005322_040 0.0890186074 - - 60S ribosomal protein L9, putative [Ricinus communis]
18 Hb_021419_020 0.0897428733 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
19 Hb_001504_020 0.0931881703 - - 40S ribosomal protein S12A [Hevea brasiliensis]
20 Hb_002253_100 0.0948729787 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001329_290 Hb_001329_290 Hb_004449_170 Hb_004449_170 Hb_001329_290--Hb_004449_170 Hb_000286_070 Hb_000286_070 Hb_001329_290--Hb_000286_070 Hb_004787_060 Hb_004787_060 Hb_001329_290--Hb_004787_060 Hb_001564_130 Hb_001564_130 Hb_001329_290--Hb_001564_130 Hb_003292_040 Hb_003292_040 Hb_001329_290--Hb_003292_040 Hb_000265_240 Hb_000265_240 Hb_001329_290--Hb_000265_240 Hb_002477_300 Hb_002477_300 Hb_004449_170--Hb_002477_300 Hb_005588_030 Hb_005588_030 Hb_004449_170--Hb_005588_030 Hb_004449_170--Hb_004787_060 Hb_001512_060 Hb_001512_060 Hb_004449_170--Hb_001512_060 Hb_004449_170--Hb_000286_070 Hb_000286_070--Hb_004787_060 Hb_000009_530 Hb_000009_530 Hb_000286_070--Hb_000009_530 Hb_001534_120 Hb_001534_120 Hb_000286_070--Hb_001534_120 Hb_000286_070--Hb_003292_040 Hb_003935_020 Hb_003935_020 Hb_000286_070--Hb_003935_020 Hb_005322_040 Hb_005322_040 Hb_004787_060--Hb_005322_040 Hb_021419_020 Hb_021419_020 Hb_004787_060--Hb_021419_020 Hb_010921_010 Hb_010921_010 Hb_004787_060--Hb_010921_010 Hb_001564_130--Hb_003292_040 Hb_000670_020 Hb_000670_020 Hb_001564_130--Hb_000670_020 Hb_001564_130--Hb_001512_060 Hb_011970_030 Hb_011970_030 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070 Hb_003292_040--Hb_011970_030 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150 Hb_000265_240--Hb_001564_130 Hb_000265_240--Hb_004449_170 Hb_000377_070 Hb_000377_070 Hb_000265_240--Hb_000377_070 Hb_030565_080 Hb_030565_080 Hb_000265_240--Hb_030565_080 Hb_000265_240--Hb_003292_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3399 9.71605 24.5182 10.7554 26.908 19.2049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.4304 39.9766 10.2361 14.1429 10.8801

CAGE analysis