Hb_003292_040

Information

Type transcription factor
Description TF Family: MBF1
Location Contig3292: 28007-34359
Sequence    

Annotation

kegg
ID gmx:100500420
description uncharacterized LOC100500420
nr
ID NP_001237790.1
description uncharacterized protein LOC100500420 [Glycine max]
swissprot
ID Q9SJI8
description Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1
trembl
ID C6T1P5
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0043565
description multiprotein-bridging factor 1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34608: 28137-33732 , PASA_asmbl_34609: 33861-34270
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003292_040 0.0 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
2 Hb_001564_130 0.0482783205 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_011970_030 0.0494751684 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
4 Hb_000670_020 0.0628676147 - - PREDICTED: chromatin modification-related protein EAF3-like [Jatropha curcas]
5 Hb_000610_010 0.0671910204 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
6 Hb_003687_230 0.0678669168 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
7 Hb_002233_150 0.0711860582 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
8 Hb_000009_530 0.0749775329 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
9 Hb_000286_070 0.0774320033 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
10 Hb_000174_110 0.0793999241 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
11 Hb_011224_060 0.0805899989 - - hypothetical protein POPTR_0011s16880g [Populus trichocarpa]
12 Hb_001329_290 0.081111799 - - PREDICTED: uncharacterized protein LOC105642699 [Jatropha curcas]
13 Hb_003683_050 0.0823888159 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
14 Hb_021419_020 0.0828791024 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
15 Hb_001534_120 0.0843377343 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
16 Hb_004093_090 0.0846080428 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
17 Hb_005618_160 0.0848085657 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
18 Hb_001586_040 0.0848123616 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
19 Hb_001348_070 0.085582387 - - Uncharacterized protein isoform 1 [Theobroma cacao]
20 Hb_000144_100 0.0861495337 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003292_040 Hb_003292_040 Hb_001564_130 Hb_001564_130 Hb_003292_040--Hb_001564_130 Hb_011970_030 Hb_011970_030 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_000610_010 Hb_000610_010 Hb_003292_040--Hb_000610_010 Hb_003687_230 Hb_003687_230 Hb_003292_040--Hb_003687_230 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150 Hb_001564_130--Hb_000670_020 Hb_001512_060 Hb_001512_060 Hb_001564_130--Hb_001512_060 Hb_001564_130--Hb_011970_030 Hb_010368_020 Hb_010368_020 Hb_001564_130--Hb_010368_020 Hb_001348_070 Hb_001348_070 Hb_001564_130--Hb_001348_070 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_000640_240 Hb_000640_240 Hb_011970_030--Hb_000640_240 Hb_001454_400 Hb_001454_400 Hb_011970_030--Hb_001454_400 Hb_003683_050 Hb_003683_050 Hb_000670_020--Hb_003683_050 Hb_000670_020--Hb_001348_070 Hb_000670_020--Hb_011970_030 Hb_000670_020--Hb_010368_020 Hb_000009_530 Hb_000009_530 Hb_000610_010--Hb_000009_530 Hb_004093_090 Hb_004093_090 Hb_000610_010--Hb_004093_090 Hb_000610_010--Hb_003687_230 Hb_000107_190 Hb_000107_190 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_003687_230--Hb_000009_530 Hb_000926_310 Hb_000926_310 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_000661_250 Hb_000661_250 Hb_002233_150--Hb_000661_250 Hb_002043_190 Hb_002043_190 Hb_002233_150--Hb_002043_190 Hb_010661_030 Hb_010661_030 Hb_002233_150--Hb_010661_030 Hb_000933_180 Hb_000933_180 Hb_002233_150--Hb_000933_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
172.37 84.9625 149.267 98.9439 206.928 138.477
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
150.294 230.979 78.2495 74.4397 47.6434

CAGE analysis