Hb_001454_400

Information

Type -
Description -
Location Contig1454: 300432-304218
Sequence    

Annotation

kegg
ID gmx:100777142
description dynein light chain 2, cytoplasmic-like
nr
ID XP_012083969.1
description PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
swissprot
ID Q39580
description Dynein 8 kDa light chain, flagellar outer arm OS=Chlamydomonas reinhardtii PE=1 SV=1
trembl
ID A0A0B0NJP1
description Dynein light chain 1, cytoplasmic OS=Gossypium arboreum GN=F383_20332 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11813: 300482-304403
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_400 0.0 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
2 Hb_011970_030 0.0731525362 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
3 Hb_003878_010 0.0753236158 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
4 Hb_000085_180 0.0774444785 - - PREDICTED: syntaxin-52-like isoform X1 [Jatropha curcas]
5 Hb_000640_240 0.0864335653 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
6 Hb_024071_020 0.0869657803 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
7 Hb_000960_060 0.0874139257 - - PREDICTED: ADP-ribosylation factor 1-like 2 [Jatropha curcas]
8 Hb_004800_230 0.0880245246 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
9 Hb_158062_010 0.0890382192 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
10 Hb_000796_210 0.0910538648 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000465_430 0.0923838209 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
12 Hb_005730_120 0.0925092572 - - PREDICTED: protein WHI4 [Jatropha curcas]
13 Hb_000610_050 0.0931798915 - - skp1, putative [Ricinus communis]
14 Hb_001221_100 0.0937532971 - - PREDICTED: elongation factor 1-delta 1-like [Citrus sinensis]
15 Hb_001936_080 0.094541275 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
16 Hb_002245_030 0.0947701762 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_005288_190 0.0947860105 - - PREDICTED: exportin-4 [Jatropha curcas]
18 Hb_007875_030 0.0952266345 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
19 Hb_000092_100 0.095524769 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
20 Hb_003292_040 0.0957917607 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]

Gene co-expression network

sample Hb_001454_400 Hb_001454_400 Hb_011970_030 Hb_011970_030 Hb_001454_400--Hb_011970_030 Hb_003878_010 Hb_003878_010 Hb_001454_400--Hb_003878_010 Hb_000085_180 Hb_000085_180 Hb_001454_400--Hb_000085_180 Hb_000640_240 Hb_000640_240 Hb_001454_400--Hb_000640_240 Hb_024071_020 Hb_024071_020 Hb_001454_400--Hb_024071_020 Hb_000960_060 Hb_000960_060 Hb_001454_400--Hb_000960_060 Hb_003292_040 Hb_003292_040 Hb_011970_030--Hb_003292_040 Hb_002233_150 Hb_002233_150 Hb_011970_030--Hb_002233_150 Hb_005618_160 Hb_005618_160 Hb_011970_030--Hb_005618_160 Hb_011970_030--Hb_000640_240 Hb_001564_130 Hb_001564_130 Hb_011970_030--Hb_001564_130 Hb_128048_010 Hb_128048_010 Hb_003878_010--Hb_128048_010 Hb_007875_030 Hb_007875_030 Hb_003878_010--Hb_007875_030 Hb_001814_070 Hb_001814_070 Hb_003878_010--Hb_001814_070 Hb_002105_090 Hb_002105_090 Hb_003878_010--Hb_002105_090 Hb_004800_230 Hb_004800_230 Hb_003878_010--Hb_004800_230 Hb_003683_050 Hb_003683_050 Hb_000085_180--Hb_003683_050 Hb_000618_040 Hb_000618_040 Hb_000085_180--Hb_000618_040 Hb_033843_010 Hb_033843_010 Hb_000085_180--Hb_033843_010 Hb_004310_020 Hb_004310_020 Hb_000085_180--Hb_004310_020 Hb_000092_100 Hb_000092_100 Hb_000085_180--Hb_000092_100 Hb_001358_030 Hb_001358_030 Hb_000640_240--Hb_001358_030 Hb_003126_050 Hb_003126_050 Hb_000640_240--Hb_003126_050 Hb_066182_010 Hb_066182_010 Hb_000640_240--Hb_066182_010 Hb_096563_010 Hb_096563_010 Hb_000640_240--Hb_096563_010 Hb_003417_020 Hb_003417_020 Hb_000640_240--Hb_003417_020 Hb_001140_370 Hb_001140_370 Hb_024071_020--Hb_001140_370 Hb_000610_050 Hb_000610_050 Hb_024071_020--Hb_000610_050 Hb_024071_020--Hb_003126_050 Hb_000020_060 Hb_000020_060 Hb_024071_020--Hb_000020_060 Hb_000059_330 Hb_000059_330 Hb_024071_020--Hb_000059_330 Hb_003428_030 Hb_003428_030 Hb_024071_020--Hb_003428_030 Hb_005731_050 Hb_005731_050 Hb_000960_060--Hb_005731_050 Hb_000960_060--Hb_003428_030 Hb_033594_120 Hb_033594_120 Hb_000960_060--Hb_033594_120 Hb_001828_190 Hb_001828_190 Hb_000960_060--Hb_001828_190 Hb_028227_020 Hb_028227_020 Hb_000960_060--Hb_028227_020 Hb_000093_160 Hb_000093_160 Hb_000960_060--Hb_000093_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
127.347 60.8962 95.0848 124.436 127.909 132.41
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
152.307 151.341 61.8032 70.7221 32.1729

CAGE analysis