Hb_001358_030

Information

Type -
Description -
Location Contig1358: 46359-49714
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23870g
description POPTRDRAFT_832072; 40S ribosomal protein S3
nr
ID XP_011019367.1
description PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
swissprot
ID Q9FJA6
description 40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1
trembl
ID A9PBQ6
description 40S ribosomal protein S3 OS=Populus trichocarpa GN=POPTR_0006s23870g PE=2 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s3-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09959: 46368-49714 , PASA_asmbl_09961: 47966-48462
cDNA
(Sanger)
(ID:Location)		 006_I13.ab1: 46701-49714 , 006_N05.ab1: 46747-49714

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001358_030 0.0 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
2 Hb_000640_240 0.0586743265 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
3 Hb_012008_020 0.0600441422 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
4 Hb_105386_010 0.060569962 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_096563_010 0.060836126 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
6 Hb_002660_080 0.0628288051 - - 60S ribosomal protein L12A [Hevea brasiliensis]
7 Hb_000189_340 0.0677897012 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
8 Hb_009557_070 0.0706636887 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000099_240 0.0711095233 - - 60S ribosomal protein L7a, putative [Ricinus communis]
10 Hb_000349_060 0.071443453 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_007590_010 0.0714867346 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_005333_070 0.0715053464 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003010_030 0.0720336215 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
14 Hb_000780_060 0.0740233895 - - hypothetical protein CICLE_v10017178mg [Citrus clementina]
15 Hb_001047_100 0.0746220167 - - 40S ribosomal protein S18, putative [Ricinus communis]
16 Hb_000093_160 0.0750148182 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
17 Hb_027295_010 0.0774310847 - - 40S ribosomal protein S7, putative [Ricinus communis]
18 Hb_001301_160 0.0774715682 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
19 Hb_003929_250 0.077635739 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
20 Hb_001430_120 0.080650261 - - PREDICTED: DNA polymerase delta subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_001358_030 Hb_001358_030 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_096563_010 Hb_096563_010 Hb_001358_030--Hb_096563_010 Hb_002660_080 Hb_002660_080 Hb_001358_030--Hb_002660_080 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_003126_050 Hb_003126_050 Hb_000640_240--Hb_003126_050 Hb_066182_010 Hb_066182_010 Hb_000640_240--Hb_066182_010 Hb_000640_240--Hb_096563_010 Hb_011970_030 Hb_011970_030 Hb_000640_240--Hb_011970_030 Hb_003417_020 Hb_003417_020 Hb_000640_240--Hb_003417_020 Hb_003010_030 Hb_003010_030 Hb_012008_020--Hb_003010_030 Hb_009557_070 Hb_009557_070 Hb_012008_020--Hb_009557_070 Hb_000959_260 Hb_000959_260 Hb_012008_020--Hb_000959_260 Hb_012008_020--Hb_002660_080 Hb_002391_300 Hb_002391_300 Hb_012008_020--Hb_002391_300 Hb_001047_100 Hb_001047_100 Hb_105386_010--Hb_001047_100 Hb_105386_010--Hb_000189_340 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_003746_040 Hb_003746_040 Hb_105386_010--Hb_003746_040 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_002660_080--Hb_096563_010 Hb_000056_200 Hb_000056_200 Hb_002660_080--Hb_000056_200 Hb_001226_160 Hb_001226_160 Hb_002660_080--Hb_001226_160 Hb_002226_070 Hb_002226_070 Hb_002660_080--Hb_002226_070 Hb_001489_060 Hb_001489_060 Hb_002660_080--Hb_001489_060 Hb_001766_150 Hb_001766_150 Hb_000189_340--Hb_001766_150 Hb_000189_340--Hb_001047_100 Hb_009222_010 Hb_009222_010 Hb_000189_340--Hb_009222_010 Hb_142439_010 Hb_142439_010 Hb_000189_340--Hb_142439_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
141.609 83.3971 70.2213 85.7136 142.585 204.337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
112.237 184.793 93.2897 77.6995 39.4443

CAGE analysis