Hb_002660_080

Information

Type -
Description -
Location Contig2660: 66708-67208
Sequence    

Annotation

kegg
ID rcu:RCOM_0153900
description 60S ribosomal protein L12, putative
nr
ID ADR71265.1
description 60S ribosomal protein L12A [Hevea brasiliensis]
swissprot
ID O50003
description 60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1
trembl
ID I3NMM8
description 60S ribosomal protein L12A OS=Hevea brasiliensis GN=RPL12A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27785: 66631-67633
cDNA
(Sanger)
(ID:Location)		 006_N04.ab1: 66636-67401 , 043_B08.ab1: 66680-67244

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_080 0.0 - - 60S ribosomal protein L12A [Hevea brasiliensis]
2 Hb_001358_030 0.0628288051 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
3 Hb_096563_010 0.0635886168 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
4 Hb_000056_200 0.0643642795 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
5 Hb_001226_160 0.0650085078 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
6 Hb_002226_070 0.0688761471 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
7 Hb_001489_060 0.0699963987 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
8 Hb_012008_020 0.071583925 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
9 Hb_003929_250 0.0718654278 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
10 Hb_000103_560 0.0725369086 - - ADP-ribosylation factor, putative [Ricinus communis]
11 Hb_003126_050 0.0746173974 - - PREDICTED: cell cycle checkpoint protein RAD17 isoform X1 [Jatropha curcas]
12 Hb_000093_160 0.0768167734 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
13 Hb_003010_030 0.0771034755 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
14 Hb_063716_050 0.0773162535 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
15 Hb_003050_080 0.0792913325 - - 40S ribosomal protein S14, putative [Ricinus communis]
16 Hb_000920_180 0.0800104971 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
17 Hb_000640_240 0.0819844286 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
18 Hb_009557_070 0.082309467 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000300_060 0.0823197029 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
20 Hb_000210_180 0.0826878388 - - PREDICTED: protein YLS9-like [Jatropha curcas]

Gene co-expression network

sample Hb_002660_080 Hb_002660_080 Hb_001358_030 Hb_001358_030 Hb_002660_080--Hb_001358_030 Hb_096563_010 Hb_096563_010 Hb_002660_080--Hb_096563_010 Hb_000056_200 Hb_000056_200 Hb_002660_080--Hb_000056_200 Hb_001226_160 Hb_001226_160 Hb_002660_080--Hb_001226_160 Hb_002226_070 Hb_002226_070 Hb_002660_080--Hb_002226_070 Hb_001489_060 Hb_001489_060 Hb_002660_080--Hb_001489_060 Hb_000640_240 Hb_000640_240 Hb_001358_030--Hb_000640_240 Hb_012008_020 Hb_012008_020 Hb_001358_030--Hb_012008_020 Hb_105386_010 Hb_105386_010 Hb_001358_030--Hb_105386_010 Hb_001358_030--Hb_096563_010 Hb_000189_340 Hb_000189_340 Hb_001358_030--Hb_000189_340 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_000656_400 Hb_000656_400 Hb_001226_160--Hb_000656_400 Hb_001226_160--Hb_000056_200 Hb_001226_160--Hb_096563_010 Hb_001226_160--Hb_002226_070 Hb_003615_010 Hb_003615_010 Hb_001226_160--Hb_003615_010 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_001489_060--Hb_063716_050 Hb_001489_060--Hb_003050_080 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001489_060--Hb_001821_010 Hb_001489_060--Hb_000056_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
263.504 130.616 123.862 160.515 263.418 320.384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
211.764 448.544 197.351 159.437 97.0998

CAGE analysis