Hb_000926_250

Information

Type -
Description -
Location Contig926: 258597-264560
Sequence    

Annotation

kegg
ID pop:POPTR_0011s08930g
description POPTRDRAFT_568517; hypothetical protein
nr
ID XP_002317329.1
description hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
swissprot
ID O32107
description Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1
trembl
ID B9I154
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s08930g PE=4 SV=1
Gene Ontology
ID GO:0004601
description acid phosphatase vanadium-dependent haloperoxidase-related protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62688: 258711-264234 , PASA_asmbl_62689: 264281-264545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000926_250 0.0 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
2 Hb_000007_100 0.0553902786 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
3 Hb_033834_040 0.0572437472 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001604_080 0.0599295552 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
5 Hb_002226_070 0.0608429811 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
6 Hb_002284_240 0.0619224124 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
7 Hb_063716_050 0.0625169373 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
8 Hb_000174_090 0.0626799138 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
9 Hb_159809_020 0.0639848512 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000327_190 0.0640797874 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
11 Hb_000832_140 0.0652875837 - - actin depolymerizing factor 4 [Hevea brasiliensis]
12 Hb_000613_140 0.0666256077 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
13 Hb_003050_080 0.0668411289 - - 40S ribosomal protein S14, putative [Ricinus communis]
14 Hb_002214_040 0.0671037149 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_000815_040 0.0674180576 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
16 Hb_000529_190 0.0679290461 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
17 Hb_003615_010 0.0692201775 - - 60S ribosomal protein L8, putative [Ricinus communis]
18 Hb_003599_040 0.0697399845 - - unnamed protein product [Vitis vinifera]
19 Hb_000103_560 0.069904066 - - ADP-ribosylation factor, putative [Ricinus communis]
20 Hb_001489_060 0.0707226786 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000926_250 Hb_000926_250 Hb_000007_100 Hb_000007_100 Hb_000926_250--Hb_000007_100 Hb_033834_040 Hb_033834_040 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_002284_240 Hb_002284_240 Hb_000926_250--Hb_002284_240 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050 Hb_000926_300 Hb_000926_300 Hb_000007_100--Hb_000926_300 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_000007_100--Hb_002284_240 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_003599_040 Hb_003599_040 Hb_000007_100--Hb_003599_040 Hb_033834_040--Hb_002226_070 Hb_000103_090 Hb_000103_090 Hb_033834_040--Hb_000103_090 Hb_004032_010 Hb_004032_010 Hb_033834_040--Hb_004032_010 Hb_002183_090 Hb_002183_090 Hb_033834_040--Hb_002183_090 Hb_159809_020 Hb_159809_020 Hb_033834_040--Hb_159809_020 Hb_010180_020 Hb_010180_020 Hb_001604_080--Hb_010180_020 Hb_000815_040 Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_001604_080--Hb_063716_050 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190 Hb_002226_070--Hb_004032_010 Hb_001489_060 Hb_001489_060 Hb_002226_070--Hb_001489_060 Hb_000056_200 Hb_000056_200 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_002284_240--Hb_003599_040 Hb_002284_240--Hb_159809_020 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_000327_190 Hb_000327_190 Hb_002284_240--Hb_000327_190 Hb_063716_050--Hb_000103_560 Hb_063716_050--Hb_001489_060 Hb_003050_080 Hb_003050_080 Hb_063716_050--Hb_003050_080 Hb_063716_050--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_063716_050--Hb_000832_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.6207 19.0411 26.8322 28.1265 50.4079 67.4172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.4503 87.0744 55.701 35.3046 16.3156

CAGE analysis