Hb_001489_060

Information

Type -
Description -
Location Contig1489: 43383-45889
Sequence    

Annotation

kegg
ID rcu:RCOM_0698030
description hypothetical protein
nr
ID XP_012091945.1
description PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JML3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21701 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12356: 43486-45794
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001489_060 0.0 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
2 Hb_063716_050 0.0475012586 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
3 Hb_003050_080 0.0565819946 - - 40S ribosomal protein S14, putative [Ricinus communis]
4 Hb_002226_070 0.058690686 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
5 Hb_002006_020 0.0602386568 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
6 Hb_001821_010 0.0651449006 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
7 Hb_000056_200 0.0666754525 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
8 Hb_002660_080 0.0699963987 - - 60S ribosomal protein L12A [Hevea brasiliensis]
9 Hb_004735_040 0.0706540765 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
10 Hb_000926_250 0.0707226786 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
11 Hb_010921_010 0.0723071841 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
12 Hb_000302_010 0.072451472 - - Vesicle-associated membrane protein, putative [Ricinus communis]
13 Hb_005993_040 0.0727897099 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
14 Hb_002686_020 0.0730099612 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
15 Hb_002043_190 0.073403749 - - rwd domain-containing protein, putative [Ricinus communis]
16 Hb_001512_060 0.0737145271 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
17 Hb_003929_250 0.0750277497 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
18 Hb_000103_560 0.075903255 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_005045_060 0.0762472063 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
20 Hb_000832_140 0.0766067617 - - actin depolymerizing factor 4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001489_060 Hb_001489_060 Hb_063716_050 Hb_063716_050 Hb_001489_060--Hb_063716_050 Hb_003050_080 Hb_003050_080 Hb_001489_060--Hb_003050_080 Hb_002226_070 Hb_002226_070 Hb_001489_060--Hb_002226_070 Hb_002006_020 Hb_002006_020 Hb_001489_060--Hb_002006_020 Hb_001821_010 Hb_001821_010 Hb_001489_060--Hb_001821_010 Hb_000056_200 Hb_000056_200 Hb_001489_060--Hb_000056_200 Hb_000103_560 Hb_000103_560 Hb_063716_050--Hb_000103_560 Hb_063716_050--Hb_003050_080 Hb_000529_190 Hb_000529_190 Hb_063716_050--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_063716_050--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_063716_050--Hb_001604_080 Hb_002686_020 Hb_002686_020 Hb_003050_080--Hb_002686_020 Hb_003050_080--Hb_000832_140 Hb_001540_010 Hb_001540_010 Hb_003050_080--Hb_001540_010 Hb_003050_080--Hb_000056_200 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_002006_020--Hb_063716_050 Hb_002477_070 Hb_002477_070 Hb_002006_020--Hb_002477_070 Hb_002006_020--Hb_003050_080 Hb_002006_020--Hb_002226_070 Hb_004440_090 Hb_004440_090 Hb_002006_020--Hb_004440_090 Hb_000815_320 Hb_000815_320 Hb_001821_010--Hb_000815_320 Hb_001105_030 Hb_001105_030 Hb_001821_010--Hb_001105_030 Hb_001821_010--Hb_000056_200 Hb_012725_050 Hb_012725_050 Hb_001821_010--Hb_012725_050 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3526 8.78245 14.9985 13.6272 28.9015 24.6925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2488 40.7825 20.6792 13.6865 8.77648

CAGE analysis