Hb_000243_030

Information

Type -
Description -
Location Contig243: 4932-6371
Sequence    

Annotation

kegg
ID pop:POPTR_0018s02560g
description POPTRDRAFT_1106227; hypothetical protein
nr
ID XP_012078414.1
description PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
swissprot
ID Q09522
description Probable dimethyladenosine transferase OS=Caenorhabditis elegans GN=E02H1.1 PE=3 SV=2
trembl
ID B9IL59
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s02560g PE=4 SV=1
Gene Ontology
ID GO:0005739
description probable dimethyladenosine transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25344: 4869-6087
cDNA
(Sanger)
(ID:Location)		 005_I07.ab1: 6190-12590

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_030 0.0 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
2 Hb_000056_200 0.0583921643 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
3 Hb_063716_050 0.0632231667 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
4 Hb_006541_030 0.0644386603 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
5 Hb_000398_180 0.0652145407 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
6 Hb_002226_070 0.0659598095 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
7 Hb_004440_090 0.0660064579 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
8 Hb_000120_790 0.0683011905 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
9 Hb_118707_030 0.0687388873 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
10 Hb_002006_020 0.0703921834 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
11 Hb_010504_020 0.0703923007 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_001226_160 0.0713356185 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
13 Hb_000920_180 0.0726157861 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
14 Hb_002609_020 0.0738170288 - - PREDICTED: phosphatidylinositol N-acetylglucosaminyltransferase subunit P-like [Jatropha curcas]
15 Hb_000529_190 0.0743562074 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
16 Hb_009838_080 0.0769758171 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
17 Hb_005305_080 0.0769763366 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
18 Hb_003929_250 0.0775336573 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
19 Hb_002214_040 0.078295559 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
20 Hb_001776_140 0.0795587901 - - PREDICTED: probable GTP-binding protein OBGM, mitochondrial isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_030 Hb_000243_030 Hb_000056_200 Hb_000056_200 Hb_000243_030--Hb_000056_200 Hb_063716_050 Hb_063716_050 Hb_000243_030--Hb_063716_050 Hb_006541_030 Hb_006541_030 Hb_000243_030--Hb_006541_030 Hb_000398_180 Hb_000398_180 Hb_000243_030--Hb_000398_180 Hb_002226_070 Hb_002226_070 Hb_000243_030--Hb_002226_070 Hb_004440_090 Hb_004440_090 Hb_000243_030--Hb_004440_090 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_000103_560 Hb_000103_560 Hb_063716_050--Hb_000103_560 Hb_001489_060 Hb_001489_060 Hb_063716_050--Hb_001489_060 Hb_063716_050--Hb_003050_080 Hb_000529_190 Hb_000529_190 Hb_063716_050--Hb_000529_190 Hb_000832_140 Hb_000832_140 Hb_063716_050--Hb_000832_140 Hb_001604_080 Hb_001604_080 Hb_063716_050--Hb_001604_080 Hb_007380_070 Hb_007380_070 Hb_006541_030--Hb_007380_070 Hb_005539_350 Hb_005539_350 Hb_006541_030--Hb_005539_350 Hb_006541_030--Hb_000398_180 Hb_006541_030--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_006541_030--Hb_002874_190 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_000398_180--Hb_007380_070 Hb_004032_010 Hb_004032_010 Hb_002226_070--Hb_004032_010 Hb_033834_040 Hb_033834_040 Hb_002226_070--Hb_033834_040 Hb_002226_070--Hb_001489_060 Hb_000926_250 Hb_000926_250 Hb_002226_070--Hb_000926_250 Hb_002226_070--Hb_000056_200 Hb_000059_370 Hb_000059_370 Hb_002226_070--Hb_000059_370 Hb_003005_020 Hb_003005_020 Hb_004440_090--Hb_003005_020 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.28665 1.72913 1.58948 2.06824 4.3387 5.18104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.07275 6.1268 4.20407 1.84296 2.16414

CAGE analysis