Hb_000815_320

Information

Type -
Description -
Location Contig815: 335032-337085
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011102mg
description hypothetical protein
nr
ID XP_012067703.1
description PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
swissprot
ID Q9SEL5
description Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3
trembl
ID A0A067KYN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15649 PE=4 SV=1
Gene Ontology
ID GO:0005770
description vesicle transport v-snare 13-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59380: 335073-337043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000815_320 0.0 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
2 Hb_001821_010 0.0479609526 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
3 Hb_001662_070 0.0518324637 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
4 Hb_001195_480 0.0601699006 - - cop9 complex subunit, putative [Ricinus communis]
5 Hb_000580_090 0.0633297578 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
6 Hb_004116_190 0.0655842739 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
7 Hb_005054_060 0.0658869504 - - PREDICTED: syntaxin-81 [Jatropha curcas]
8 Hb_001157_020 0.0659121298 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
9 Hb_001105_030 0.0675669444 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
10 Hb_004108_070 0.0690931956 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
11 Hb_011344_210 0.0702444138 - - PREDICTED: probable calcium-binding protein CML13 [Jatropha curcas]
12 Hb_001328_040 0.0715988989 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
13 Hb_001633_050 0.0717161213 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
14 Hb_118419_010 0.0730932029 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_024071_020 0.0732651452 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
16 Hb_005045_060 0.0732756711 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial [Jatropha curcas]
17 Hb_000656_240 0.0743246897 - - proteasome subunit alpha type, putative [Ricinus communis]
18 Hb_003057_090 0.0743577879 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
19 Hb_010222_020 0.0748642225 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
20 Hb_000777_040 0.0757411309 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_000815_320 Hb_000815_320 Hb_001821_010 Hb_001821_010 Hb_000815_320--Hb_001821_010 Hb_001662_070 Hb_001662_070 Hb_000815_320--Hb_001662_070 Hb_001195_480 Hb_001195_480 Hb_000815_320--Hb_001195_480 Hb_000580_090 Hb_000580_090 Hb_000815_320--Hb_000580_090 Hb_004116_190 Hb_004116_190 Hb_000815_320--Hb_004116_190 Hb_005054_060 Hb_005054_060 Hb_000815_320--Hb_005054_060 Hb_001105_030 Hb_001105_030 Hb_001821_010--Hb_001105_030 Hb_000056_200 Hb_000056_200 Hb_001821_010--Hb_000056_200 Hb_012725_050 Hb_012725_050 Hb_001821_010--Hb_012725_050 Hb_002609_020 Hb_002609_020 Hb_001821_010--Hb_002609_020 Hb_004735_040 Hb_004735_040 Hb_001821_010--Hb_004735_040 Hb_025645_010 Hb_025645_010 Hb_001662_070--Hb_025645_010 Hb_000787_050 Hb_000787_050 Hb_001662_070--Hb_000787_050 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_004096_090 Hb_004096_090 Hb_001195_480--Hb_004096_090 Hb_004109_170 Hb_004109_170 Hb_000580_090--Hb_004109_170 Hb_012286_030 Hb_012286_030 Hb_000580_090--Hb_012286_030 Hb_000580_090--Hb_000656_240 Hb_000580_090--Hb_004116_190 Hb_000580_090--Hb_001105_030 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_004116_190--Hb_000656_240 Hb_000020_060 Hb_000020_060 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040 Hb_005054_060--Hb_004096_090 Hb_003057_090 Hb_003057_090 Hb_005054_060--Hb_003057_090 Hb_009694_010 Hb_009694_010 Hb_005054_060--Hb_009694_010 Hb_005054_060--Hb_001821_010 Hb_000465_090 Hb_000465_090 Hb_005054_060--Hb_000465_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.278 13.5615 30.5612 28.8969 31.3459 33.9983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.8116 57.3949 37.8243 19.1012 17.7679

CAGE analysis