Hb_004096_090

Information

Type -
Description -
Location Contig4096: 103596-105652
Sequence    

Annotation

kegg
ID rcu:RCOM_0760850
description Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative
nr
ID XP_002530983.1
description Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
swissprot
ID P82412
description 30S ribosomal protein 3, chloroplastic OS=Spinacia oleracea GN=PSRP3 PE=1 SV=1
trembl
ID B9SYB4
description Plastid-specific 30S ribosomal protein 3, chloroplast, putative OS=Ricinus communis GN=RCOM_0760850 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 30s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40421: 103626-105650 , PASA_asmbl_40422: 104222-104567 , PASA_asmbl_40423: 106525-106896
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004096_090 0.0 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
2 Hb_001195_480 0.069090846 - - cop9 complex subunit, putative [Ricinus communis]
3 Hb_004116_060 0.0694448196 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
4 Hb_009694_010 0.070814725 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005054_060 0.0708744927 - - PREDICTED: syntaxin-81 [Jatropha curcas]
6 Hb_000633_020 0.0732361198 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
7 Hb_010222_020 0.076415674 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
8 Hb_000815_320 0.0774889316 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
9 Hb_000465_090 0.0804603895 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
10 Hb_000362_200 0.0828227782 - - exonuclease family protein [Populus trichocarpa]
11 Hb_000656_240 0.0831816354 - - proteasome subunit alpha type, putative [Ricinus communis]
12 Hb_001341_090 0.0835789681 - - PREDICTED: adenylate kinase isoenzyme 6 homolog [Jatropha curcas]
13 Hb_001821_010 0.0839004109 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
14 Hb_021419_020 0.0872353013 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
15 Hb_004453_170 0.0875351423 - - hypothetical protein POPTR_0018s01370g [Populus trichocarpa]
16 Hb_000667_070 0.0880718732 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
17 Hb_002811_260 0.0883875841 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
18 Hb_000416_040 0.0905541227 transcription factor TF Family: HSF Heat shock factor protein, putative [Ricinus communis]
19 Hb_004410_080 0.0905934653 - - cellular nucleic acid binding protein, putative [Ricinus communis]
20 Hb_004108_070 0.0909728684 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004096_090 Hb_004096_090 Hb_001195_480 Hb_001195_480 Hb_004096_090--Hb_001195_480 Hb_004116_060 Hb_004116_060 Hb_004096_090--Hb_004116_060 Hb_009694_010 Hb_009694_010 Hb_004096_090--Hb_009694_010 Hb_005054_060 Hb_005054_060 Hb_004096_090--Hb_005054_060 Hb_000633_020 Hb_000633_020 Hb_004096_090--Hb_000633_020 Hb_010222_020 Hb_010222_020 Hb_004096_090--Hb_010222_020 Hb_001534_120 Hb_001534_120 Hb_001195_480--Hb_001534_120 Hb_000656_240 Hb_000656_240 Hb_001195_480--Hb_000656_240 Hb_000815_320 Hb_000815_320 Hb_001195_480--Hb_000815_320 Hb_000529_030 Hb_000529_030 Hb_001195_480--Hb_000529_030 Hb_004453_170 Hb_004453_170 Hb_001195_480--Hb_004453_170 Hb_120410_010 Hb_120410_010 Hb_004116_060--Hb_120410_010 Hb_005588_030 Hb_005588_030 Hb_004116_060--Hb_005588_030 Hb_002530_030 Hb_002530_030 Hb_004116_060--Hb_002530_030 Hb_000093_160 Hb_000093_160 Hb_004116_060--Hb_000093_160 Hb_001142_030 Hb_001142_030 Hb_004116_060--Hb_001142_030 Hb_028227_020 Hb_028227_020 Hb_009694_010--Hb_028227_020 Hb_000465_090 Hb_000465_090 Hb_009694_010--Hb_000465_090 Hb_001157_020 Hb_001157_020 Hb_009694_010--Hb_001157_020 Hb_007632_030 Hb_007632_030 Hb_009694_010--Hb_007632_030 Hb_005697_060 Hb_005697_060 Hb_009694_010--Hb_005697_060 Hb_005054_060--Hb_000815_320 Hb_003057_090 Hb_003057_090 Hb_005054_060--Hb_003057_090 Hb_005054_060--Hb_009694_010 Hb_001821_010 Hb_001821_010 Hb_005054_060--Hb_001821_010 Hb_005054_060--Hb_000465_090 Hb_146673_010 Hb_146673_010 Hb_000633_020--Hb_146673_010 Hb_004410_080 Hb_004410_080 Hb_000633_020--Hb_004410_080 Hb_011512_070 Hb_011512_070 Hb_000633_020--Hb_011512_070 Hb_004157_020 Hb_004157_020 Hb_000633_020--Hb_004157_020 Hb_000236_390 Hb_000236_390 Hb_000633_020--Hb_000236_390 Hb_004195_270 Hb_004195_270 Hb_010222_020--Hb_004195_270 Hb_010222_020--Hb_000815_320 Hb_010222_020--Hb_009694_010 Hb_010222_020--Hb_001195_480 Hb_000053_110 Hb_000053_110 Hb_010222_020--Hb_000053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.53824 4.77906 11.1275 7.08759 7.64733 11.1636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4431 18.3829 7.85888 4.00965 5.84964

CAGE analysis