Hb_004410_080

Information

Type -
Description -
Location Contig4410: 65926-73173
Sequence    

Annotation

kegg
ID rcu:RCOM_1596490
description cellular nucleic acid binding protein, putative
nr
ID XP_002510478.1
description cellular nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q04832
description DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=3 SV=1
trembl
ID B9R835
description Cellular nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1596490 PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42664: 66292-66520 , PASA_asmbl_42665: 65930-72887
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004410_080 0.0 - - cellular nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000633_020 0.0702534178 - - PREDICTED: uncharacterized protein LOC105630002 [Jatropha curcas]
3 Hb_000656_240 0.0735771159 - - proteasome subunit alpha type, putative [Ricinus communis]
4 Hb_004157_020 0.0775646254 - - PREDICTED: histone H2B-like [Gossypium raimondii]
5 Hb_032264_070 0.0852293168 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
6 Hb_011519_010 0.0853544637 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
7 Hb_000367_160 0.0855290358 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
8 Hb_003052_190 0.087689733 - - PREDICTED: uncharacterized protein LOC105641937 isoform X2 [Jatropha curcas]
9 Hb_003813_030 0.0880842086 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
10 Hb_000667_070 0.0885999405 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
11 Hb_019280_050 0.0892586299 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
12 Hb_001012_010 0.0905146744 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
13 Hb_004096_090 0.0905934653 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
14 Hb_011512_070 0.0922541961 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
15 Hb_012286_030 0.0923019865 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
16 Hb_004109_170 0.0923427296 - - PREDICTED: probable ribokinase [Jatropha curcas]
17 Hb_146673_010 0.0924504821 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
18 Hb_000465_090 0.0928545003 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
19 Hb_001123_130 0.0938059402 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000580_090 0.0941927589 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004410_080 Hb_004410_080 Hb_000633_020 Hb_000633_020 Hb_004410_080--Hb_000633_020 Hb_000656_240 Hb_000656_240 Hb_004410_080--Hb_000656_240 Hb_004157_020 Hb_004157_020 Hb_004410_080--Hb_004157_020 Hb_032264_070 Hb_032264_070 Hb_004410_080--Hb_032264_070 Hb_011519_010 Hb_011519_010 Hb_004410_080--Hb_011519_010 Hb_000367_160 Hb_000367_160 Hb_004410_080--Hb_000367_160 Hb_146673_010 Hb_146673_010 Hb_000633_020--Hb_146673_010 Hb_004096_090 Hb_004096_090 Hb_000633_020--Hb_004096_090 Hb_011512_070 Hb_011512_070 Hb_000633_020--Hb_011512_070 Hb_000633_020--Hb_004157_020 Hb_000236_390 Hb_000236_390 Hb_000633_020--Hb_000236_390 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_004889_020 Hb_004889_020 Hb_004157_020--Hb_004889_020 Hb_018133_020 Hb_018133_020 Hb_004157_020--Hb_018133_020 Hb_000676_390 Hb_000676_390 Hb_004157_020--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_004157_020--Hb_026889_030 Hb_000329_320 Hb_000329_320 Hb_032264_070--Hb_000329_320 Hb_032264_070--Hb_000656_240 Hb_001268_420 Hb_001268_420 Hb_032264_070--Hb_001268_420 Hb_000985_030 Hb_000985_030 Hb_032264_070--Hb_000985_030 Hb_000614_160 Hb_000614_160 Hb_032264_070--Hb_000614_160 Hb_000046_050 Hb_000046_050 Hb_032264_070--Hb_000046_050 Hb_004162_130 Hb_004162_130 Hb_011519_010--Hb_004162_130 Hb_032202_140 Hb_032202_140 Hb_011519_010--Hb_032202_140 Hb_002600_020 Hb_002600_020 Hb_011519_010--Hb_002600_020 Hb_000917_060 Hb_000917_060 Hb_011519_010--Hb_000917_060 Hb_000465_160 Hb_000465_160 Hb_011519_010--Hb_000465_160 Hb_012286_030 Hb_012286_030 Hb_000367_160--Hb_012286_030 Hb_000155_200 Hb_000155_200 Hb_000367_160--Hb_000155_200 Hb_019280_050 Hb_019280_050 Hb_000367_160--Hb_019280_050 Hb_000193_110 Hb_000193_110 Hb_000367_160--Hb_000193_110 Hb_000336_150 Hb_000336_150 Hb_000367_160--Hb_000336_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.68099 4.8983 10.4313 3.73556 5.60888 7.04589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.42522 12.841 8.25446 4.29603 5.05185

CAGE analysis