Hb_032264_070

Information

Type -
Description -
Location Contig32264: 57415-66021
Sequence    

Annotation

kegg
ID rcu:RCOM_0326970
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_012089922.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
swissprot
ID Q9SXJ6
description ATP-dependent Clp protease proteolytic subunit 3, chloroplastic OS=Arabidopsis thaliana GN=CLPP3 PE=1 SV=1
trembl
ID A0A067JRQ3
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_02507 PE=3 SV=1
Gene Ontology
ID GO:0004252
description atp-dependent clp protease proteolytic subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34210: 57543-64922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032264_070 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
2 Hb_000329_320 0.0600694779 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
3 Hb_000656_240 0.0748563508 - - proteasome subunit alpha type, putative [Ricinus communis]
4 Hb_001268_420 0.0759068918 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
5 Hb_000985_030 0.0760798485 - - PREDICTED: RRP15-like protein [Populus euphratica]
6 Hb_000614_160 0.0783657844 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
7 Hb_000046_050 0.0784877287 - - PREDICTED: LEC14B homolog [Jatropha curcas]
8 Hb_000815_070 0.0795925081 - - PREDICTED: methyltransferase-like protein 7A [Jatropha curcas]
9 Hb_005697_060 0.0796532944 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
10 Hb_007389_010 0.0800842038 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
11 Hb_001662_150 0.0800996586 - - Scaffold attachment factor B1 [Medicago truncatula]
12 Hb_000329_200 0.0808215188 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
13 Hb_000465_090 0.0812624247 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
14 Hb_000827_050 0.0813596061 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
15 Hb_000777_040 0.0819194861 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
16 Hb_007163_070 0.0823118841 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
17 Hb_004109_170 0.083408841 - - PREDICTED: probable ribokinase [Jatropha curcas]
18 Hb_000205_090 0.0834483442 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
19 Hb_001427_200 0.0839410275 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
20 Hb_002600_090 0.0839581539 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_032264_070 Hb_032264_070 Hb_000329_320 Hb_000329_320 Hb_032264_070--Hb_000329_320 Hb_000656_240 Hb_000656_240 Hb_032264_070--Hb_000656_240 Hb_001268_420 Hb_001268_420 Hb_032264_070--Hb_001268_420 Hb_000985_030 Hb_000985_030 Hb_032264_070--Hb_000985_030 Hb_000614_160 Hb_000614_160 Hb_032264_070--Hb_000614_160 Hb_000046_050 Hb_000046_050 Hb_032264_070--Hb_000046_050 Hb_005269_070 Hb_005269_070 Hb_000329_320--Hb_005269_070 Hb_002490_020 Hb_002490_020 Hb_000329_320--Hb_002490_020 Hb_000917_060 Hb_000917_060 Hb_000329_320--Hb_000917_060 Hb_000883_020 Hb_000883_020 Hb_000329_320--Hb_000883_020 Hb_000866_260 Hb_000866_260 Hb_000329_320--Hb_000866_260 Hb_004116_190 Hb_004116_190 Hb_000656_240--Hb_004116_190 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_001604_060 Hb_001604_060 Hb_001268_420--Hb_001604_060 Hb_001427_200 Hb_001427_200 Hb_001268_420--Hb_001427_200 Hb_004195_270 Hb_004195_270 Hb_001268_420--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001268_420--Hb_001105_030 Hb_028872_080 Hb_028872_080 Hb_001268_420--Hb_028872_080 Hb_001489_080 Hb_001489_080 Hb_000985_030--Hb_001489_080 Hb_002169_040 Hb_002169_040 Hb_000985_030--Hb_002169_040 Hb_000783_020 Hb_000783_020 Hb_000985_030--Hb_000783_020 Hb_000777_040 Hb_000777_040 Hb_000985_030--Hb_000777_040 Hb_000985_030--Hb_005269_070 Hb_004934_100 Hb_004934_100 Hb_000985_030--Hb_004934_100 Hb_007389_010 Hb_007389_010 Hb_000614_160--Hb_007389_010 Hb_000260_030 Hb_000260_030 Hb_000614_160--Hb_000260_030 Hb_005496_140 Hb_005496_140 Hb_000614_160--Hb_005496_140 Hb_012019_010 Hb_012019_010 Hb_000614_160--Hb_012019_010 Hb_000614_220 Hb_000614_220 Hb_000614_160--Hb_000614_220 Hb_002046_180 Hb_002046_180 Hb_000614_160--Hb_002046_180 Hb_004324_270 Hb_004324_270 Hb_000046_050--Hb_004324_270 Hb_012675_050 Hb_012675_050 Hb_000046_050--Hb_012675_050 Hb_003540_240 Hb_003540_240 Hb_000046_050--Hb_003540_240 Hb_000061_210 Hb_000061_210 Hb_000046_050--Hb_000061_210 Hb_000107_160 Hb_000107_160 Hb_000046_050--Hb_000107_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.2968 5.71796 12.8316 6.13159 10.6899 10.7636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6115 19.8623 14.5687 9.24202 12.2999

CAGE analysis