Hb_001427_200

Information

Type -
Description -
Location Contig1427: 162942-165937
Sequence    

Annotation

kegg
ID rcu:RCOM_1048230
description hypothetical protein
nr
ID XP_012076805.1
description PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KPN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07325 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11330: 162963-165890 , PASA_asmbl_11331: 162963-165884
cDNA
(Sanger)
(ID:Location)		 049_G06.ab1: 165071-165890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001427_200 0.0 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
2 Hb_001268_420 0.0678034846 - - PREDICTED: uncharacterized protein LOC105630158 [Jatropha curcas]
3 Hb_003683_120 0.0786267924 - - conserved hypothetical protein [Ricinus communis]
4 Hb_032264_070 0.0839410275 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
5 Hb_004195_270 0.0921798085 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
6 Hb_001105_030 0.0924445607 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
7 Hb_012675_050 0.0955026498 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012725_050 0.0957303889 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
9 Hb_001318_260 0.0989612493 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
10 Hb_028486_030 0.0998984281 - - hypothetical protein JCGZ_12706 [Jatropha curcas]
11 Hb_001604_060 0.0999414862 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
12 Hb_002226_060 0.1014156032 - - PREDICTED: uncharacterized protein LOC105641377 [Jatropha curcas]
13 Hb_026549_040 0.1016283305 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
14 Hb_000046_050 0.1039615359 - - PREDICTED: LEC14B homolog [Jatropha curcas]
15 Hb_005847_060 0.1044644751 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
16 Hb_001292_020 0.1061072137 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
17 Hb_000614_220 0.1068514614 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
18 Hb_018133_020 0.1074249059 - - transporter, putative [Ricinus communis]
19 Hb_007163_070 0.107745666 - - PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform X1 [Jatropha curcas]
20 Hb_000329_200 0.1081193655 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]

Gene co-expression network

sample Hb_001427_200 Hb_001427_200 Hb_001268_420 Hb_001268_420 Hb_001427_200--Hb_001268_420 Hb_003683_120 Hb_003683_120 Hb_001427_200--Hb_003683_120 Hb_032264_070 Hb_032264_070 Hb_001427_200--Hb_032264_070 Hb_004195_270 Hb_004195_270 Hb_001427_200--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001427_200--Hb_001105_030 Hb_012675_050 Hb_012675_050 Hb_001427_200--Hb_012675_050 Hb_001604_060 Hb_001604_060 Hb_001268_420--Hb_001604_060 Hb_001268_420--Hb_032264_070 Hb_001268_420--Hb_004195_270 Hb_001268_420--Hb_001105_030 Hb_028872_080 Hb_028872_080 Hb_001268_420--Hb_028872_080 Hb_026549_040 Hb_026549_040 Hb_003683_120--Hb_026549_040 Hb_004934_110 Hb_004934_110 Hb_003683_120--Hb_004934_110 Hb_001292_020 Hb_001292_020 Hb_003683_120--Hb_001292_020 Hb_001246_060 Hb_001246_060 Hb_003683_120--Hb_001246_060 Hb_028486_030 Hb_028486_030 Hb_003683_120--Hb_028486_030 Hb_000329_320 Hb_000329_320 Hb_032264_070--Hb_000329_320 Hb_000656_240 Hb_000656_240 Hb_032264_070--Hb_000656_240 Hb_000985_030 Hb_000985_030 Hb_032264_070--Hb_000985_030 Hb_000614_160 Hb_000614_160 Hb_032264_070--Hb_000614_160 Hb_000046_050 Hb_000046_050 Hb_032264_070--Hb_000046_050 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_118419_010 Hb_118419_010 Hb_004195_270--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001821_010 Hb_001821_010 Hb_001105_030--Hb_001821_010 Hb_012725_050 Hb_012725_050 Hb_001105_030--Hb_012725_050 Hb_001157_020 Hb_001157_020 Hb_001105_030--Hb_001157_020 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_000815_320 Hb_000815_320 Hb_001105_030--Hb_000815_320 Hb_011909_100 Hb_011909_100 Hb_012675_050--Hb_011909_100 Hb_000107_160 Hb_000107_160 Hb_012675_050--Hb_000107_160 Hb_000061_210 Hb_000061_210 Hb_012675_050--Hb_000061_210 Hb_012675_050--Hb_000046_050 Hb_103118_010 Hb_103118_010 Hb_012675_050--Hb_103118_010 Hb_002408_020 Hb_002408_020 Hb_012675_050--Hb_002408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.2208 6.53624 21.5547 8.60249 18.9895 15.0807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1069 39.9852 20.119 10.2164 23.9913

CAGE analysis