Hb_000787_050

Information

Type -
Description -
Location Contig787: 70296-75894
Sequence    

Annotation

kegg
ID rcu:RCOM_0185020
description electron transport oxidoreductase, putative
nr
ID XP_012070757.1
description PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
swissprot
ID Q9C6I6
description Electron transfer flavoprotein subunit alpha, mitochondrial OS=Arabidopsis thaliana GN=ETFA PE=1 SV=1
trembl
ID A0A067KVP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00830 PE=4 SV=1
Gene Ontology
ID GO:0005507
description electron transfer flavoprotein subunit mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58116: 70426-75856 , PASA_asmbl_58117: 70426-75856 , PASA_asmbl_58118: 71408-71643 , PASA_asmbl_58119: 73852-73959
cDNA
(Sanger)
(ID:Location)		 050_P18.ab1: 71619-75856

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_050 0.0 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
2 Hb_001662_070 0.0572461136 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
3 Hb_002835_240 0.0626883634 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
4 Hb_025645_010 0.0638295641 - - PREDICTED: proteasome subunit beta type-5 [Jatropha curcas]
5 Hb_000331_080 0.0712280393 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
6 Hb_118419_010 0.0735922866 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
7 Hb_004195_270 0.0744888083 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
8 Hb_000347_540 0.0774575889 - - protein binding protein, putative [Ricinus communis]
9 Hb_000175_440 0.0788147142 - - signal peptidase family protein [Populus trichocarpa]
10 Hb_000815_320 0.0788992382 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
11 Hb_001157_020 0.0795725453 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
12 Hb_004994_100 0.0806324322 - - acyl-CoA thioesterase, putative [Ricinus communis]
13 Hb_001579_030 0.0806899817 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
14 Hb_012725_050 0.0811830176 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
15 Hb_000251_070 0.082964711 - - hypothetical protein L484_010641 [Morus notabilis]
16 Hb_001821_010 0.0861753335 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
17 Hb_001105_030 0.0863418771 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
18 Hb_003732_020 0.0865780958 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
19 Hb_032202_190 0.0887476324 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
20 Hb_004116_190 0.089081715 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000787_050 Hb_000787_050 Hb_001662_070 Hb_001662_070 Hb_000787_050--Hb_001662_070 Hb_002835_240 Hb_002835_240 Hb_000787_050--Hb_002835_240 Hb_025645_010 Hb_025645_010 Hb_000787_050--Hb_025645_010 Hb_000331_080 Hb_000331_080 Hb_000787_050--Hb_000331_080 Hb_118419_010 Hb_118419_010 Hb_000787_050--Hb_118419_010 Hb_004195_270 Hb_004195_270 Hb_000787_050--Hb_004195_270 Hb_001662_070--Hb_025645_010 Hb_000815_320 Hb_000815_320 Hb_001662_070--Hb_000815_320 Hb_165132_010 Hb_165132_010 Hb_001662_070--Hb_165132_010 Hb_001821_010 Hb_001821_010 Hb_001662_070--Hb_001821_010 Hb_000347_540 Hb_000347_540 Hb_001662_070--Hb_000347_540 Hb_003057_090 Hb_003057_090 Hb_002835_240--Hb_003057_090 Hb_000175_440 Hb_000175_440 Hb_002835_240--Hb_000175_440 Hb_012725_050 Hb_012725_050 Hb_002835_240--Hb_012725_050 Hb_013726_020 Hb_013726_020 Hb_002835_240--Hb_013726_020 Hb_008748_040 Hb_008748_040 Hb_002835_240--Hb_008748_040 Hb_000771_120 Hb_000771_120 Hb_025645_010--Hb_000771_120 Hb_003092_040 Hb_003092_040 Hb_025645_010--Hb_003092_040 Hb_001579_030 Hb_001579_030 Hb_025645_010--Hb_001579_030 Hb_007477_070 Hb_007477_070 Hb_025645_010--Hb_007477_070 Hb_153112_020 Hb_153112_020 Hb_000331_080--Hb_153112_020 Hb_004994_100 Hb_004994_100 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000840_030 Hb_000840_030 Hb_000331_080--Hb_000840_030 Hb_002686_020 Hb_002686_020 Hb_000331_080--Hb_002686_020 Hb_000331_080--Hb_012725_050 Hb_004109_170 Hb_004109_170 Hb_118419_010--Hb_004109_170 Hb_000205_090 Hb_000205_090 Hb_118419_010--Hb_000205_090 Hb_000580_090 Hb_000580_090 Hb_118419_010--Hb_000580_090 Hb_118419_010--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_118419_010--Hb_001105_030 Hb_118419_010--Hb_000815_320 Hb_010222_020 Hb_010222_020 Hb_004195_270--Hb_010222_020 Hb_004195_270--Hb_000205_090 Hb_002490_020 Hb_002490_020 Hb_004195_270--Hb_002490_020 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.6602 11.4113 23.8218 19.9506 31.9667 21.4864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.8812 39.2905 33.3804 15.4967 17.1708

CAGE analysis