Hb_002490_020

Information

Type -
Description -
Location Contig2490: 19731-27595
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09730g
description POPTRDRAFT_648034; peptidyl-tRNA hydrolase family protein
nr
ID XP_002305823.1
description peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
swissprot
ID Q9LF14
description Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1
trembl
ID B9H311
description Peptidyl-tRNA hydrolase family protein OS=Populus trichocarpa GN=POPTR_0004s09730g PE=3 SV=1
Gene Ontology
ID GO:0004045
description chloroplastic group iib intron splicing facilitator crs2- chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25897: 24401-27712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002490_020 0.0 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
2 Hb_000329_320 0.0627840563 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
3 Hb_004195_270 0.0750849224 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
4 Hb_003747_200 0.0765625061 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
5 Hb_010222_020 0.0775363092 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
6 Hb_002141_030 0.0776229244 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002600_090 0.080588845 - - ATP binding protein, putative [Ricinus communis]
8 Hb_002799_110 0.0837194791 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
9 Hb_032264_070 0.0846125811 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Jatropha curcas]
10 Hb_000212_330 0.0883877032 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_005116_160 0.0886327394 transcription factor TF Family: TRAF -
12 Hb_003939_050 0.0886802031 - - protein with unknown function [Ricinus communis]
13 Hb_000684_470 0.0895428593 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
14 Hb_001983_020 0.0897440052 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_017358_030 0.0900931337 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
16 Hb_000917_060 0.0943597111 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
17 Hb_000205_090 0.0955890059 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
18 Hb_000883_020 0.0960817171 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
19 Hb_000866_010 0.0962928552 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000521_080 0.0963821737 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]

Gene co-expression network

sample Hb_002490_020 Hb_002490_020 Hb_000329_320 Hb_000329_320 Hb_002490_020--Hb_000329_320 Hb_004195_270 Hb_004195_270 Hb_002490_020--Hb_004195_270 Hb_003747_200 Hb_003747_200 Hb_002490_020--Hb_003747_200 Hb_010222_020 Hb_010222_020 Hb_002490_020--Hb_010222_020 Hb_002141_030 Hb_002141_030 Hb_002490_020--Hb_002141_030 Hb_002600_090 Hb_002600_090 Hb_002490_020--Hb_002600_090 Hb_032264_070 Hb_032264_070 Hb_000329_320--Hb_032264_070 Hb_005269_070 Hb_005269_070 Hb_000329_320--Hb_005269_070 Hb_000917_060 Hb_000917_060 Hb_000329_320--Hb_000917_060 Hb_000883_020 Hb_000883_020 Hb_000329_320--Hb_000883_020 Hb_000866_260 Hb_000866_260 Hb_000329_320--Hb_000866_260 Hb_004195_270--Hb_010222_020 Hb_000205_090 Hb_000205_090 Hb_004195_270--Hb_000205_090 Hb_118419_010 Hb_118419_010 Hb_004195_270--Hb_118419_010 Hb_000787_050 Hb_000787_050 Hb_004195_270--Hb_000787_050 Hb_001268_420 Hb_001268_420 Hb_004195_270--Hb_001268_420 Hb_000771_120 Hb_000771_120 Hb_003747_200--Hb_000771_120 Hb_000302_270 Hb_000302_270 Hb_003747_200--Hb_000302_270 Hb_002016_150 Hb_002016_150 Hb_003747_200--Hb_002016_150 Hb_142368_010 Hb_142368_010 Hb_003747_200--Hb_142368_010 Hb_003747_200--Hb_002141_030 Hb_000815_320 Hb_000815_320 Hb_010222_020--Hb_000815_320 Hb_009694_010 Hb_009694_010 Hb_010222_020--Hb_009694_010 Hb_004096_090 Hb_004096_090 Hb_010222_020--Hb_004096_090 Hb_001195_480 Hb_001195_480 Hb_010222_020--Hb_001195_480 Hb_000053_110 Hb_000053_110 Hb_010222_020--Hb_000053_110 Hb_000521_080 Hb_000521_080 Hb_002141_030--Hb_000521_080 Hb_000365_120 Hb_000365_120 Hb_002141_030--Hb_000365_120 Hb_000403_050 Hb_000403_050 Hb_002141_030--Hb_000403_050 Hb_002107_030 Hb_002107_030 Hb_002141_030--Hb_002107_030 Hb_000059_330 Hb_000059_330 Hb_002141_030--Hb_000059_330 Hb_000985_030 Hb_000985_030 Hb_002600_090--Hb_000985_030 Hb_001971_010 Hb_001971_010 Hb_002600_090--Hb_001971_010 Hb_000599_250 Hb_000599_250 Hb_002600_090--Hb_000599_250 Hb_000260_030 Hb_000260_030 Hb_002600_090--Hb_000260_030 Hb_001711_020 Hb_001711_020 Hb_002600_090--Hb_001711_020 Hb_001489_080 Hb_001489_080 Hb_002600_090--Hb_001489_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5204 7.44094 12.9981 6.51333 9.17355 12.0362
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4778 15.2829 16.6409 8.47305 12.5949

CAGE analysis